Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30485
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              108   3e-24
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   3.1  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   9.4  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_2821| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  108 bits (260), Expect = 3e-24
 Identities = 51/79 (64%), Positives = 63/79 (79%)
 Frame = +1

Query: 268 IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVL 447
           I VVVG++T+D R++++P + + AL  +E ARARIL AGGEILTFDQLALRAP G+ TVL
Sbjct: 186 ICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVL 245

Query: 448 VQGQRNAREAVRHFGPAPG 504
           +QG R AREA RH G APG
Sbjct: 246 LQGPRKAREAERHMGLAPG 264



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 34/70 (48%), Positives = 42/70 (60%)
 Frame = +2

Query: 38  GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 217
           GIDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPL 168

Query: 218 SVSRLARHMK 247
           S++RL R MK
Sbjct: 169 SLARLVRKMK 178


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 426 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 316
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 403 DQLALRAPTG-KKTVLVQGQRNAREAVRHFGPAPGARALTLNPMFAPRDMKKQGPV 567
           D++ + +P   +  VL++      + ++HFGPA   R     P+  PRD+++  P+
Sbjct: 114 DKITMLSPYSLEMAVLLRLYFQGDDEIKHFGPATYQRPQADKPVQIPRDLRRFKPI 169


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 350 VT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 255
           +T R  T++FGIL  L +     TT  IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +1

Query: 340 LHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGARALT 519
           + V +KA   I  AGG++ ++  LA   P   K +   G R   E +      PG   L 
Sbjct: 465 IDVVKKAMEEIREAGGKLDSYYDLAPALPNLAKHLEAIGVRRKGEDISLTSQEPGHNYLK 524

Query: 520 LNPMFA 537
           L P  A
Sbjct: 525 LEPSAA 530


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 329 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 448
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 373 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 492
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 504  SWSRAKVTHCLTSISLTLYQY 442
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


>SB_2821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 325 SSVSCTVSRHL*LSPLPRQSNPHDWLLHVARQTRHRDW 212
           S V  T+  H  LSPL   S  H+WL  V  +    +W
Sbjct: 195 SRVVVTIGCHAWLSPLVVTSGCHEWLSRVVVKIGCHEW 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,582,615
Number of Sequences: 59808
Number of extensions: 447123
Number of successful extensions: 1230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)