BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30485 (624 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 108 2e-23 DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 108 2e-23 BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 108 2e-23 BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 108 2e-23 BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 108 2e-23 AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 108 2e-23 AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 34 0.47 AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 34 0.47 >L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 protein. Length = 188 Score = 108 bits (259), Expect = 2e-23 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +1 Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435 RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134 Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504 TVL+ G R RE RHFG APG Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157 Score = 85.4 bits (202), Expect = 1e-16 Identities = 41/73 (56%), Positives = 48/73 (65%) Frame = +2 Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214 MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60 Query: 215 ISVSRLARHMKKP 253 +S+SR+ R MK P Sbjct: 61 LSLSRMIRKMKLP 73 Score = 29.9 bits (64), Expect = 7.6 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%) Frame = +3 Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578 SHTKPYVR+KG E+AR RRA+ Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183 >DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 protein. Length = 164 Score = 108 bits (259), Expect = 2e-23 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +1 Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435 RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G Sbjct: 52 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 111 Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504 TVL+ G R RE RHFG APG Sbjct: 112 GTVLLSGPRKGREVYRHFGKAPG 134 Score = 56.4 bits (130), Expect = 8e-08 Identities = 24/35 (68%), Positives = 30/35 (85%) Frame = +2 Query: 149 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKP 253 TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLP 50 Score = 29.9 bits (64), Expect = 7.6 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%) Frame = +3 Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578 SHTKPYVR+KG E+AR RRA+ Sbjct: 138 SHTKPYVRSKGRKFERAR-GRRAS 160 >BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 protein. Length = 188 Score = 108 bits (259), Expect = 2e-23 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +1 Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435 RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134 Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504 TVL+ G R RE RHFG APG Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157 Score = 83.4 bits (197), Expect = 6e-16 Identities = 40/73 (54%), Positives = 47/73 (64%) Frame = +2 Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214 MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60 Query: 215 ISVSRLARHMKKP 253 + +SR+ R MK P Sbjct: 61 LCLSRMIRKMKLP 73 Score = 29.9 bits (64), Expect = 7.6 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%) Frame = +3 Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578 SHTKPYVR+KG E+AR RRA+ Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183 >BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 protein. Length = 188 Score = 108 bits (259), Expect = 2e-23 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +1 Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435 RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134 Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504 TVL+ G R RE RHFG APG Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157 Score = 85.4 bits (202), Expect = 1e-16 Identities = 41/73 (56%), Positives = 48/73 (65%) Frame = +2 Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214 MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60 Query: 215 ISVSRLARHMKKP 253 +S+SR+ R MK P Sbjct: 61 LSLSRMIRKMKLP 73 Score = 29.9 bits (64), Expect = 7.6 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%) Frame = +3 Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578 SHTKPYVR+KG E+AR RRA+ Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183 >BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 protein. Length = 188 Score = 108 bits (259), Expect = 2e-23 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +1 Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435 RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134 Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504 TVL+ G R RE RHFG APG Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157 Score = 85.4 bits (202), Expect = 1e-16 Identities = 41/73 (56%), Positives = 48/73 (65%) Frame = +2 Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214 MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60 Query: 215 ISVSRLARHMKKP 253 +S+SR+ R MK P Sbjct: 61 LSLSRMIRKMKLP 73 Score = 29.9 bits (64), Expect = 7.6 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%) Frame = +3 Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578 SHTKPYVR+KG E+AR RRA+ Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183 >AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 protein. Length = 188 Score = 108 bits (259), Expect = 2e-23 Identities = 52/83 (62%), Positives = 63/83 (75%) Frame = +1 Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435 RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134 Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504 TVL+ G R RE RHFG APG Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157 Score = 85.4 bits (202), Expect = 1e-16 Identities = 41/73 (56%), Positives = 48/73 (65%) Frame = +2 Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214 MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60 Query: 215 ISVSRLARHMKKP 253 +S+SR+ R MK P Sbjct: 61 LSLSRMIRKMKLP 73 Score = 29.9 bits (64), Expect = 7.6 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%) Frame = +3 Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578 SHTKPYVR+KG E+AR RRA+ Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183 >AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens cDNA FLJ46261 fis, clone TESTI4025062. ). Length = 280 Score = 33.9 bits (74), Expect = 0.47 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Frame = +3 Query: 270 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 449 CR SG S R CS +S T CW + F +SCS W ++ Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCWSSGTSS 85 Query: 450 T----RSAKCS*GSASLWPCSRSTRS 515 T RS+ S S S W S+ S Sbjct: 86 TPCSCRSSGTSSTSCSCWSSGTSSTS 111 >AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens cDNA FLJ43836 fis, clone TESTI4005857. ). Length = 280 Score = 33.9 bits (74), Expect = 0.47 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Frame = +3 Query: 270 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 449 CR SG S R CS +S T CW + F +SCS W ++ Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCWSSGTSS 85 Query: 450 T----RSAKCS*GSASLWPCSRSTRS 515 T RS+ S S S W S+ S Sbjct: 86 TPCSCRSSGTSSTSCSCWSSGTSSTS 111 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 98,004,014 Number of Sequences: 237096 Number of extensions: 2238769 Number of successful extensions: 4865 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 4619 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4862 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 6747805200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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