Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30485
(624 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 108 2e-23
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 108 2e-23
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 108 2e-23
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 108 2e-23
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 108 2e-23
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 108 2e-23
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 34 0.47
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 34 0.47
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 108 bits (259), Expect = 2e-23
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G
Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134
Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504
TVL+ G R RE RHFG APG
Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157
Score = 85.4 bits (202), Expect = 1e-16
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKP 253
+S+SR+ R MK P
Sbjct: 61 LSLSRMIRKMKLP 73
Score = 29.9 bits (64), Expect = 7.6
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +3
Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578
SHTKPYVR+KG E+AR RRA+
Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 108 bits (259), Expect = 2e-23
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G
Sbjct: 52 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 111
Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504
TVL+ G R RE RHFG APG
Sbjct: 112 GTVLLSGPRKGREVYRHFGKAPG 134
Score = 56.4 bits (130), Expect = 8e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 149 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKP 253
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLP 50
Score = 29.9 bits (64), Expect = 7.6
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +3
Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578
SHTKPYVR+KG E+AR RRA+
Sbjct: 138 SHTKPYVRSKGRKFERAR-GRRAS 160
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 108 bits (259), Expect = 2e-23
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G
Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134
Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504
TVL+ G R RE RHFG APG
Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157
Score = 83.4 bits (197), Expect = 6e-16
Identities = 40/73 (54%), Positives = 47/73 (64%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKP 253
+ +SR+ R MK P
Sbjct: 61 LCLSRMIRKMKLP 73
Score = 29.9 bits (64), Expect = 7.6
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +3
Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578
SHTKPYVR+KG E+AR RRA+
Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 108 bits (259), Expect = 2e-23
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G
Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134
Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504
TVL+ G R RE RHFG APG
Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157
Score = 85.4 bits (202), Expect = 1e-16
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKP 253
+S+SR+ R MK P
Sbjct: 61 LSLSRMIRKMKLP 73
Score = 29.9 bits (64), Expect = 7.6
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +3
Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578
SHTKPYVR+KG E+AR RRA+
Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 108 bits (259), Expect = 2e-23
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G
Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134
Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504
TVL+ G R RE RHFG APG
Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157
Score = 85.4 bits (202), Expect = 1e-16
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKP 253
+S+SR+ R MK P
Sbjct: 61 LSLSRMIRKMKLP 73
Score = 29.9 bits (64), Expect = 7.6
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +3
Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578
SHTKPYVR+KG E+AR RRA+
Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 108 bits (259), Expect = 2e-23
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G
Sbjct: 75 RENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGC 134
Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504
TVL+ G R RE RHFG APG
Sbjct: 135 GTVLLSGPRKGREVYRHFGKAPG 157
Score = 85.4 bits (202), Expect = 1e-16
Identities = 41/73 (56%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKP 253
+S+SR+ R MK P
Sbjct: 61 LSLSRMIRKMKLP 73
Score = 29.9 bits (64), Expect = 7.6
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +3
Query: 513 SHTKPYVRTKGH--EKARPSRRAN 578
SHTKPYVR+KG E+AR RRA+
Sbjct: 161 SHTKPYVRSKGRKFERAR-GRRAS 183
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 33.9 bits (74), Expect = 0.47
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = +3
Query: 270 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 449
CR SG S R CS +S T CW + F +SCS W ++
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCWSSGTSS 85
Query: 450 T----RSAKCS*GSASLWPCSRSTRS 515
T RS+ S S S W S+ S
Sbjct: 86 TPCSCRSSGTSSTSCSCWSSGTSSTS 111
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 33.9 bits (74), Expect = 0.47
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = +3
Query: 270 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 449
CR SG S R CS +S T CW + F +SCS W ++
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCWSSGTSS 85
Query: 450 T----RSAKCS*GSASLWPCSRSTRS 515
T RS+ S S S W S+ S
Sbjct: 86 TPCSCRSSGTSSTSCSCWSSGTSSTS 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,004,014
Number of Sequences: 237096
Number of extensions: 2238769
Number of successful extensions: 4865
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4862
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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