Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30485
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 118 2e-27
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 117 6e-27
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 111 4e-25
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.47
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.62
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.9
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 28 4.4
At4g03470.1 68417.m00474 ankyrin repeat family protein contains ... 28 4.4
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 4.4
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 4.4
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 4.4
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 4.4
At4g35730.1 68417.m05071 expressed protein contains Pfam profil... 27 7.7
At1g32190.1 68414.m03959 expressed protein 27 7.7
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 118 bits (285), Expect = 2e-27
Identities = 55/83 (66%), Positives = 70/83 (84%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
+E IAV+VGT+T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+
Sbjct: 74 KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQ 133
Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504
TVL++G +N+REAV+HFGPAPG
Sbjct: 134 NTVLLRGPKNSREAVKHFGPAPG 156
Score = 57.2 bits (132), Expect = 8e-09
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 35 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 211
MGID I +K +RT KS D+ TN+KFN ++L+RLFMS++N+
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60
Query: 212 PISVSRLARHM 244
P+S+SRL M
Sbjct: 61 PLSLSRLVEFM 71
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 492 PCSRSTRSHTKPYVRTKGH--EKARPSRRA 575
P SH+KPYVR KG EKAR R++
Sbjct: 153 PAPGVPHSHSKPYVRAKGRKFEKARGKRKS 182
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 117 bits (282), Expect = 6e-27
Identities = 54/83 (65%), Positives = 70/83 (84%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
++ IAV+VGT+T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+
Sbjct: 74 KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQ 133
Query: 436 KTVLVQGQRNAREAVRHFGPAPG 504
TVL++G +N+REAV+HFGPAPG
Sbjct: 134 NTVLLRGPKNSREAVKHFGPAPG 156
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 35 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 211
MGID I +K +RT KS D+ +N+ FN ++L+RLFMS++N+
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60
Query: 212 PISVSRLARHM 244
P+S+SRL M
Sbjct: 61 PLSLSRLVEFM 71
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 492 PCSRSTRSHTKPYVRTKGH--EKARPSRRA 575
P S+TKPYVR KG EKAR R++
Sbjct: 153 PAPGVPHSNTKPYVRHKGRKFEKARGKRKS 182
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 111 bits (267), Expect = 4e-25
Identities = 54/84 (64%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-G 432
++G IAV+VGTVT+DVR+ +P +TV AL TE ARARI AGGE LTFDQLAL PT
Sbjct: 21 KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWS 80
Query: 433 KKTVLVQGQRNAREAVRHFGPAPG 504
+ TVL++G +N REAV+HFGPAPG
Sbjct: 81 ENTVLLRGPKNTREAVKHFGPAPG 104
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 420 CSDWQEDSTGTRSAKCS*GSASLW-PCSRSTRSHTKPYVRTKGH--EKARPSRRA 575
C W E++ R K + + + P SHTKPYVR G E AR RR+
Sbjct: 76 CPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRS 130
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 191 MSRINRPPISVSRLARHM 244
MS++N+ P+S+SRL R+M
Sbjct: 1 MSKVNKAPLSLSRLVRYM 18
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 493 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 401
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 336 CSSCYRKSSCTHFGCWRRNSYF 401
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 388 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 480
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 346 VTEKARARILAAGGEILTFDQLALRAPTGK--KTVLVQGQRNAREAVRHF-GPAPGARAL 516
+TE+A R+ + G +LT + R+ GK V +R+A +A+ G + G RA+
Sbjct: 18 ITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77
Query: 517 TLNPMFAPRDMKKQGP 564
+N + GP
Sbjct: 78 RVNDVTTRGGRMNPGP 93
>At4g03470.1 68417.m00474 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 683
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -1
Query: 330 RHLRYLVQSHVICDCPHYHGNQTLTIGFFMWRAKRDTEIGGRLIRLIKSRRRTI*LNLAF 151
RHL Q + + + GN L + WR + E+GG+ LI++ + L++A
Sbjct: 389 RHLTAHEQINHLANEKDVDGNTPLHLATIYWRPRAVRELGGKKNLLIQNNNGLVALDIAE 448
Query: 150 VRL 142
+L
Sbjct: 449 SKL 451
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 400 FDQLALRAPTGKKTVLVQGQRNAREAV 480
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 400 FDQLALRAPTGKKTVLVQGQRNAREAV 480
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 300 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 425
R+ + +E GGC+SC KS T C R+ + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 477 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 355
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At4g35730.1 68417.m05071 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 430
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 327 DGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRS 458
D SS Y K + G RR+SY + G + SD++E+ T T +
Sbjct: 289 DSETSSYYAKPGAENRGMGRRHSYN-NPGINESDYEEEYTNTEA 331
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 336 CSSCYRKSSCTHFGCWR 386
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,312,003
Number of Sequences: 28952
Number of extensions: 312113
Number of successful extensions: 884
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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