Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30483
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    28   1.4  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   1.9  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   7.7  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   7.7  

>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 307 GRGPENLQKPFEEDPA-GAVLPVALDVHVPGGGA 405
           G+  E+  K F+E    GAV+   LD H  GGGA
Sbjct: 226 GQAAESQSKAFKETADFGAVIITKLDGHAKGGGA 259


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +2

Query: 191 PTGQGARPRGRQVLRNWLGEGQFGK---EGRYKVIMKKVDLPVVDRKTCKSHLRRTRLGR 361
           P     R  G  ++R  LGEG FGK      YK   +KV L  + R+  K      R+ R
Sbjct: 23  PEAISKRHIGPYIIRETLGEGSFGKVKLATHYKT-QQKVALKFISRQLLKKSDMHMRVER 81


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 251 LPPTSCEAPDARGGALPGRWETRHSHVRG*IYWSLEEQQSYVVE 120
           LPP    +  ++   L  +W+T++  +   I+W +++Q S  +E
Sbjct: 181 LPPDKFHSDQSKA-LLEPKWKTKNYLISHLIFWIIDQQSSSSIE 223


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 363  NRPSRVLLKWLLQVFRSTTGKSTFFMMTLYLPSFPNCPSPNQLRST*RPRGRAPWPVG 190
            N+  R +   L+ +F  T G+    +M  Y  S+PNC + +   ++    G  PW  G
Sbjct: 1429 NKNFRSIRNALVLLFTMTFGEGWNDVMHDYTISYPNCVNGDDFYNS--DCGNKPWAYG 1484


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 262 PELSF-PQPVAKHLTPAGARSLAGGRHATPTFGAESTGVS 146
           P +SF P   +++LTP  ++SLA       +F + S   S
Sbjct: 189 PTVSFSPASTSENLTPTSSKSLASNTSLVQSFNSASRSSS 228


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 505  HSCGEDGTPGVYVDVSNLRTWIDDKVAGKGYDTRSYEP 618
            H   +D TP +Y +      +  +++   GY+    EP
Sbjct: 1013 HGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEP 1050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,817
Number of Sequences: 5004
Number of extensions: 54666
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)