Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30483
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 33 0.28
07_03_1686 + 28657337-28658668 32 0.48
01_01_0483 - 3550429-3551184 32 0.48
08_02_0593 + 19078264-19078609,19078724-19082256 31 0.84
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 31 0.84
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 30 1.5
02_01_0552 + 4074001-4074341,4075118-4075257,4075647-4075838,407... 30 1.5
11_07_0012 + 27346844-27346949,27347152-27347756 29 3.4
09_02_0269 - 6527150-6527754,6527957-6528062 29 3.4
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 3.4
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 29 3.4
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 29 4.5
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 29 4.5
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816... 29 4.5
01_05_0356 - 21338488-21340062 29 4.5
12_02_1224 + 27158810-27161366,27161593-27161969 28 6.0
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 28 6.0
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567... 28 6.0
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 28 7.9
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 28 7.9
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 28 7.9
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 28 7.9
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 139 NRAMS*NRFPLLKSLCITISLTVLS-*YGYISFVFCVSHSPAL 14
N M N F LLK LCIT+S LS Y Y+S V + P+L
Sbjct: 329 NTPMVPNTFLLLKYLCITLSAVTLSPSYDYLSLVSFLDACPSL 371
>07_03_1686 + 28657337-28658668
Length = 443
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 202 GSAPPRASGASQLVGGRTVREGR*IQGHHEEGGLAGRG 315
GS PP AS + G GR + G +E GGL GRG
Sbjct: 6 GSVPPAAS--TPAAGDEATAAGRVLLGRYELGGLLGRG 41
>01_01_0483 - 3550429-3551184
Length = 251
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 349 PAGAVLPVALDVHVPGGGARQGHLPGGRGVAPRVPHRL*EESLCPIRHRSLGHSCGEDGT 528
PA L A+ + GGG R G + GG G+AP PH + C + S G D
Sbjct: 157 PAPGQLAAAVSAGMYGGGRRLGVIDGG-GIAPPSPH----TAGCYYARNNNAGSIGADVA 211
Query: 529 PGV-YVDVSN 555
P + Y V+N
Sbjct: 212 PVLPYASVAN 221
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +1
Query: 196 RPGSAPPRASGASQLVGGRTVREGR*IQGHHEEGGLAGRGPENLQKPFEEDPAGAVLPVA 375
RPG+ PPR A G + GR ++G GG G G E ++ PA + VA
Sbjct: 148 RPGAVPPRPVAADGRGEGTSTVRGRVLEGTTRGGGRGG-GMEREREVVA--PARNAVAVA 204
Query: 376 LDVHVPGGGARQGHL 420
D+ GG G L
Sbjct: 205 GDLATHGGERVAGPL 219
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 289 EEGGLAGRGPENLQKPFEEDPAGAVLPVALDVHVPGGGAR--QGHLPG 426
E GG AG+ P + + PAG PVALD+ G G GHL G
Sbjct: 598 EWGGAAGKQPVTWHRAYFNAPAGGA-PVALDLGSMGKGQAWVNGHLIG 644
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +2
Query: 386 MSPGGEPDKDTCR--GDGGSPLVC 451
+ PG +PD DTC GDGG L C
Sbjct: 724 VDPGDDPDDDTCGICGDGGDLLCC 747
>02_01_0552 +
4074001-4074341,4075118-4075257,4075647-4075838,
4077211-4077518
Length = 326
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 166 PRTWEWRVSHRPGSAPPRASGASQLVGGRTVREGR*IQGHHEEGGLAG 309
P W+W + PGS+ S A+ R + +G EEGG G
Sbjct: 16 PLLWDWADAAVPGSSSGEVSAAAAAAAAHPGRRRKEKRGRAEEGGGGG 63
>11_07_0012 + 27346844-27346949,27347152-27347756
Length = 236
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 190 SHRPGSAPPRASGASQLVGGRTVREGR*IQGHHEEGGLAGRGPENLQKPFEEDPAGAVLP 369
S+ GS + +G + R G+ +G E +G G ++P + P+ P
Sbjct: 37 SYHLGSGSTKLAGMRRRGAARGGHAGKEWRGDGREEWRSG-GERREERP-QSFPSQIDTP 94
Query: 370 VALDVH--VPGGGARQGHLPGGRGVAPRVPHR 459
AL +PGGG Q + GGRG V R
Sbjct: 95 SALAARSLLPGGGEEQRAVAGGRGAERGVAAR 126
>09_02_0269 - 6527150-6527754,6527957-6528062
Length = 236
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 190 SHRPGSAPPRASGASQLVGGRTVREGR*IQGHHEEGGLAGRGPENLQKPFEEDPAGAVLP 369
S+ GS + +G + R G+ +G E +G G ++P + P+ P
Sbjct: 37 SYHLGSGSTKLAGMRRRGAARGGHAGKEWRGDGREEWRSG-GERREERP-QSFPSQIDTP 94
Query: 370 VALDVH--VPGGGARQGHLPGGRGVAPRVPHR 459
AL +PGGG Q + GGRG V R
Sbjct: 95 SALAARSLLPGGGEEQRAVAGGRGAERGVAAR 126
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -2
Query: 249 SPNQLRST*RPRGRAPWPVGDTPLPRSGLNLLESRGTTELCRRTGSPY*SP 97
SP + RS R R+P P +P RS + S RR GSP SP
Sbjct: 235 SPPRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSP 285
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 519 LSAAMPQATMPYWT*RFFS*SMGHTRGDPPSPRQVS 412
L+ P PY RFFS S+ +RG PSP+Q S
Sbjct: 48 LTPPPPPPLTPY---RFFSSSVSESRGTSPSPKQES 80
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -2
Query: 435 PPSPRQVSLSGSPPGDMNVECNWKNRPSRVLLKWLLQVFRSTTGKSTFFMMTLYLPSFPN 256
PP P Q S PP +++E + + R SR L++ LQ + ++T +L P
Sbjct: 39 PPGPLQRRSSLPPPPPLDLEGDDQERDSRHLIRSNLQRQAPSQWLRRSSVIT-WLHMLPT 97
Query: 255 CPS 247
CPS
Sbjct: 98 CPS 100
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 125 RHSSVVP-RDSSRFSPERGSGVSPTGQGARPRG 220
RHSSV P DS RGSG S +G G R RG
Sbjct: 4 RHSSVTPGNDSGSGRRGRGSG-SGSGSGRRSRG 35
>01_06_1728 +
39480252-39480450,39480552-39481224,39481554-39481638,
39481731-39481820,39481953-39482026,39482421-39482505,
39482582-39482668,39482797-39482927,39483642-39483723,
39483810-39483857,39484793-39484912
Length = 557
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 339 KWLLQVFRSTTGKSTFFMMTLYLPSFPNCPSPNQL 235
+W L S TG+S +Y+PS CP QL
Sbjct: 354 EWHLDTSISATGRSKVLQFVVYIPSARECPLYLQL 388
>01_05_0356 - 21338488-21340062
Length = 524
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 213 GRAPWPVGDTPLPRSGLNLLESRG 142
G+ P P G TPLP G NLL+ RG
Sbjct: 35 GKPPLPPGPTPLPLIG-NLLDLRG 57
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 357 PSRVLLKWLLQVFRSTTGKSTFFMMTLYLPSFPNCPSPNQLR 232
P +++ + LL+ G F + L P+ P CP P +LR
Sbjct: 554 PLQLIREGLLESVAGNPGLCVAFRLNLTDPALPLCPKPARLR 595
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 295 GGLAGRGPENLQKPFEEDPAGAVLPVALDVHVP----GGGARQGHLPGGRGVAPRVPHRL 462
GG G G ++ + AG V P DV GGG R+G GG V RV R
Sbjct: 447 GGSGGGGRREQRQQVDVRGAGGVRPAGGDVRRVRGRGGGGRRRGRGAGGDYVHVRVQQRN 506
Query: 463 *EESLCPIR 489
++L ++
Sbjct: 507 GRKTLTTVQ 515
>04_04_0287 -
24156285-24156389,24156477-24156596,24156654-24156740,
24156905-24157057,24157516-24157635,24157788-24157949,
24158029-24158247,24158574-24158616,24159147-24159210,
24159353-24159458,24159585-24159704,24159831-24159911,
24160008-24160050,24160308-24160369,24160477-24160563,
24161004-24161050,24161144-24161276,24161419-24161487,
24161924-24162010,24162317-24162448
Length = 679
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 160 IQPRTWEWRVSHRPGSAPPRASGASQLV 243
+ PRTWEW + G P +G S V
Sbjct: 278 LDPRTWEWNKVKKTGMPPGPRAGFSMCV 305
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 152 SSRFSPERGSG-VSPTGQGARPRGRQVLRNWLGEGQFGKEGRY 277
+ RFS ER G V P G R RG + + WL G + Y
Sbjct: 114 AKRFSMERRWGFVLPIGAHGRGRGSRTVLKWLKNGTVVHDASY 156
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -2
Query: 270 PSFPNCPSPNQLRST*RPRGRAPW---PVGDTPLPRS 169
P PN P P S+ RPRGR P P+ D +P+S
Sbjct: 97 PRDPNAPPPPPKPSSPRPRGRPPKSKDPISDA-IPKS 132
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 400 GARQGHLPGGRGVAPR 447
G R G PGGRGV PR
Sbjct: 43 GPRGGRFPGGRGVEPR 58
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +2
Query: 140 VPRDSSRFSPERGSGVSPTGQGARPRGRQVLRNWLGEGQFGKEGRYKVIMKKVDLPVVDR 319
VP F + G G +GA P V+ ++ G+G+ + G +L V++
Sbjct: 534 VPAGQITFRAKIGKGKRLENRGAYPEEFGVIASYKGQGRIAQPGFKNPRWVDGELLVLNG 593
Query: 320 KTCKSHLRRTRLGRFFQL 373
K+ HL LG + +
Sbjct: 594 KSTIPHLGGAELGFLYSV 611
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,115
Number of Sequences: 37544
Number of extensions: 477738
Number of successful extensions: 1888
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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