Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30483
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    36   0.020
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    36   0.027
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    34   0.082
AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical ...    33   0.25 
AL032637-6|CAA21620.2|  422|Caenorhabditis elegans Hypothetical ...    31   1.0  
U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical...    29   2.3  
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    27   9.4  
L16559-8|AAA27929.2|  643|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    27   9.4  
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B...    27   9.4  
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    27   9.4  
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     27   9.4  

>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 419 CRGDGGSPLVCPIDYEKNRYVQYGIVA 499
           C  D G+PL C +D E N+YVQ GIV+
Sbjct: 197 CWDDIGAPLECVLDVENNKYVQVGIVS 223


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 413 DTCRGDGGSPLVCPIDYEKNRYVQYGIVAWGIAAERTAL 529
           D+C+GD G PL+C  D     +   G+V+WGI   R  +
Sbjct: 235 DSCQGDSGGPLMCARD---GHWELTGVVSWGIGCARPGM 270



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 75  VKEIVIHKDFNKG-NLFYDIALLFLETPVDSAPNVGVACLP--PARERAPAGVRCFATGW 245
           V  + IH  +N G    YD A++ +  PV+++      CLP  PA E       C  TGW
Sbjct: 127 VTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAVENR----LCVVTGW 182

Query: 246 GKDSSG 263
           G    G
Sbjct: 183 GSTIEG 188



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 496 SLGHSCGEDGTPGVYVDVSNLRTWID 573
           S G  C   G PGVY +V +  TWI+
Sbjct: 260 SWGIGCARPGMPGVYGNVHSASTWIN 285


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +2

Query: 218 GRQ-VLRNWLGEGQFGKEGRYKVIMKKVDLPVVDRKTC-KSHLRRTRLGRFFQLHSTFMS 391
           GRQ V+  W   G  G   RY   ++   +P+++R  C  S    + + R     S F +
Sbjct: 149 GRQCVVSGW---GSMGL--RYAERLQAALIPIINRFDCVNSSQIYSSMSR-----SAFCA 198

Query: 392 PGGEPDKDTCRGDGGSPLVCPIDYEKNRYVQYGIVAWG 505
              E   D+C+GD G P  C    E   +V  G+++WG
Sbjct: 199 GYLEGGIDSCQGDSGGPFAC--RREDGAFVLAGVISWG 234


>AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical
           protein W03G9.7 protein.
          Length = 548

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 21  GEWDTQNTKEIYPYQDRTVKEIVIHKDFNKGNLFYDIALLFLE 149
           G+WD +  KE   Y+D  V++  + K+ N   + YD A+   E
Sbjct: 151 GQWDDRYLKEKAEYEDAMVRQETVQKELNIARVNYDNAVKIQE 193


>AL032637-6|CAA21620.2|  422|Caenorhabditis elegans Hypothetical
           protein Y43F8C.6 protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 262 PELSFPQPVAKHLTPAGARSLAGGRHATPTFGAESTG 152
           P  S P P + + T AG  +L    HA P  GA  TG
Sbjct: 270 PSSSAPGPSSSYSTGAGGGALLSTGHAVPIMGAGGTG 306


>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 68  QDSQGNRDTQGLQ*GEPVLRHSSVVPRDSSRFSPERGSGVSPTGQGARPRG 220
           +DSQG R +     G   +  +S  P  SS  +P     V PT    +P G
Sbjct: 137 EDSQGQRSSPSSPTGSETVVSTSSPPELSSESTPNTSGSVIPTSPVFKPNG 187


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 120 FYDIALLFLETPVDSAPNVGVACLPPARE---RAPAGVRCFATGWGKDSS 260
           F DIA+  LE P++ + ++  ACLP A +       G + F  G+G+D S
Sbjct: 120 FNDIAVFELEEPIEFSKDIFPACLPSAPKIPRIRETGYKLF--GYGRDPS 167


>AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical
           protein Y75B8A.31 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
 Frame = +3

Query: 12  IRAGEW-------DTQNTKEIYPYQDRTVKE----IVIHKDFNKGNLFYDIALLFLETPV 158
           +RAG+W       D        PY +R ++     +V++ + N+     D  L +  TPV
Sbjct: 97  VRAGQWARRLIINDNLECGTQIPYIERAIENGWGVVVMNTNLNESK---DQDLKYSRTPV 153

Query: 159 DSAPNVGVACLPPARERA 212
           + A  V +AC+ P+  ++
Sbjct: 154 EHAETVWIACIEPSNAKS 171


>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
           protein T14G10.2b protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LGHSCGEDGTPGVYVDVSNLRTWIDD 576
           LG S G + TP   + +  +RT +DD
Sbjct: 407 LGDSFGAEPTPATQIHIGEMRTMVDD 432


>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
           protein T14G10.2a protein.
          Length = 1470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LGHSCGEDGTPGVYVDVSNLRTWIDD 576
           LG S G + TP   + +  +RT +DD
Sbjct: 407 LGDSFGAEPTPATQIHIGEMRTMVDD 432


>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
           protein T14G10.2b protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LGHSCGEDGTPGVYVDVSNLRTWIDD 576
           LG S G + TP   + +  +RT +DD
Sbjct: 407 LGDSFGAEPTPATQIHIGEMRTMVDD 432


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
           protein T14G10.2a protein.
          Length = 1470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LGHSCGEDGTPGVYVDVSNLRTWIDD 576
           LG S G + TP   + +  +RT +DD
Sbjct: 407 LGDSFGAEPTPATQIHIGEMRTMVDD 432


>L16559-8|AAA27929.2|  643|Caenorhabditis elegans Hypothetical
           protein C06E1.9 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 319 ENLQKPFEEDPAGAVLPVALDVHVPGGGARQGHLPGGRG 435
           + L+   EED AG+  P  L    P  G+R G   GGRG
Sbjct: 563 QELETSSEEDEAGSSAPPGLSQPPPYQGSRGGR--GGRG 599


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
           protein.
          Length = 1347

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LGHSCGEDGTPGVYVDVSNLRTWIDD 576
           LG S G + TP   + +  +RT +DD
Sbjct: 284 LGDSFGAEPTPATQIHIGEMRTMVDD 309


>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
           protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LGHSCGEDGTPGVYVDVSNLRTWIDD 576
           LG S G + TP   + +  +RT +DD
Sbjct: 407 LGDSFGAEPTPATQIHIGEMRTMVDD 432


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
           protein.
          Length = 1470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LGHSCGEDGTPGVYVDVSNLRTWIDD 576
           LG S G + TP   + +  +RT +DD
Sbjct: 407 LGDSFGAEPTPATQIHIGEMRTMVDD 432


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LGHSCGEDGTPGVYVDVSNLRTWIDD 576
           LG S G + TP   + +  +RT +DD
Sbjct: 407 LGDSFGAEPTPATQIHIGEMRTMVDD 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,411
Number of Sequences: 27780
Number of extensions: 345940
Number of successful extensions: 1174
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)