Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30483
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    30   0.018
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.29 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = +3

Query: 3   ELKIRAGEWDTQNTKEIYPYQDRTVKEIVIHKDFN---KGNL-FYDIALLFLETPVDSAP 170
           +L I  GE D  +  E       ++ +++IH  ++   K +    DIALL  E  +    
Sbjct: 212 KLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGD 271

Query: 171 NVGVACLPPAR-ERAPAGVRCFATGWGKDS 257
            VG ACLP      + AG      GWG  S
Sbjct: 272 KVGPACLPFQHFLDSFAGSDVTVLGWGHTS 301


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 444 RGDPPSPRQVSLSGSPPG 391
           RG PP+P Q    G PPG
Sbjct: 36  RGSPPNPSQGPPPGGPPG 53



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 435 PPSPRQVSLSGSPP 394
           PP P   ++SG PP
Sbjct: 418 PPIPNMSNMSGMPP 431


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 292 LHDDLVSTFLPELSFPQPVAKHLTPAGARSLAGGRHATP 176
           LHD+  S FL + S  Q    +LTP+     +GG   TP
Sbjct: 120 LHDNSPS-FLSDHSRDQEQNLYLTPSPQMYSSGGEEITP 157


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 414 SLSGSPPGDMNVECNWKNRPSRVLLKWLL 328
           SLS SPP D  +E +   R   +   W L
Sbjct: 190 SLSKSPPNDEGIETDSDRRKGSIARCWSL 218


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 360 RPSRVLLKWLLQVFRSTTGKSTFFMMTLYLP 268
           RP +  L+W++++   T   ST+      LP
Sbjct: 350 RPKKTRLRWMMEIPNVTLPTSTYSGSPTELP 380


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 181  WRVSHRPGSAPPRASGASQLV 243
            WR    P   PP +SG + LV
Sbjct: 1350 WRQQQPPPPPPPPSSGQAYLV 1370


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
 Frame = +3

Query: 24  EWD-----TQNTKEIYPYQDRTVKEIVIHKDFNKGNLFYDIALL 140
           EWD      +  K+ YP  D    +I  +    +  LFY + L+
Sbjct: 200 EWDILGVPAERHKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLI 243


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 156 VDSAPNVGVACLPPARERAPAG 221
           + SAP+   +  PPA+  A AG
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAG 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,901
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)