Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30483
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protei... 29 2.2
At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI... 29 2.2
At3g49290.1 68416.m05387 expressed protein 28 5.0
At2g32160.2 68415.m03931 expressed protein 28 5.0
At2g32160.1 68415.m03930 expressed protein 28 5.0
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 28 6.6
At5g50310.1 68418.m06229 kelch repeat-containing protein similar... 27 8.7
At4g14410.2 68417.m02224 basic helix-loop-helix (bHLH) family pr... 27 8.7
At4g14410.1 68417.m02223 basic helix-loop-helix (bHLH) family pr... 27 8.7
At2g43630.1 68415.m05423 expressed protein 27 8.7
>At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 170
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 213 GRAPWPVGDTPLPRSGLNLLESRGTTELCRRTGSP 109
GR+PW GD PRSG N +E C R +P
Sbjct: 128 GRSPWKSGDWICPRSGCNEHNFASRSE-CFRCNAP 161
>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
GI:20259498
Length = 504
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 221 RQVLRNWLGEGQFGKEGRYKVIMKKVDLPVVDR 319
R ++R+W EGQ ++ YK I++++D DR
Sbjct: 248 RNIVRDWAAEGQRERDQCYKPILEELDSLFPDR 280
>At3g49290.1 68416.m05387 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -1
Query: 247 PQPVAKHLTPAGARSLAGGRHATPTFGAESTGVSRNNRAMS*NRFPLLKS 98
P PV K + + + R AT +F + ++ R++S +RFPLL+S
Sbjct: 179 PPPVRKSTSQSSSPRQPPQRSATFSFTSTIPKKEQDKRSVSPHRFPLLRS 228
>At2g32160.2 68415.m03931 expressed protein
Length = 449
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 221 RQVLRNWLGEGQFGKEGRYKVIMKKVDLPVVDR 319
R ++R+W EGQ ++ YK I++++D DR
Sbjct: 193 RNIVRDWGAEGQRERDECYKPILEELDSLFPDR 225
>At2g32160.1 68415.m03930 expressed protein
Length = 415
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 221 RQVLRNWLGEGQFGKEGRYKVIMKKVDLPVVDR 319
R ++R+W EGQ ++ YK I++++D DR
Sbjct: 193 RNIVRDWGAEGQRERDECYKPILEELDSLFPDR 225
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 27.9 bits (59), Expect = 6.6
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 4/134 (2%)
Frame = +1
Query: 166 PRTWEWRVSHRPGSAPPRASGASQLVGGRTVREGR*IQGHHEEGGLA---GRGPENLQKP 336
P +W ++PGS P RA A G G G + + G G N P
Sbjct: 821 PGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPG----GSYSDAGTPRDHGSAYANAPSP 876
Query: 337 FEEDPAGAVLPVALDVHVPGGGARQGHLPG-GRGVAPRVPHRL*EESLCPIRHRSLGHSC 513
+ G + + ++PG Q PG G V V E P + H
Sbjct: 877 YLPSTPGQPMTPSSASYLPGTPGGQPMTPGTGLDVMSPVIGGDAEAWFMPDILVDI-HKA 935
Query: 514 GEDGTPGVYVDVSN 555
GED GV DVS+
Sbjct: 936 GEDTDVGVIRDVSD 949
>At5g50310.1 68418.m06229 kelch repeat-containing protein similar to
Kelch repeats protein 3 (SP:Q08979) [Saccharomyces
cerevisiae]; contains Pfam PF01344: Kelch motif (6
repeats)
Length = 666
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 160 IQPRTWEWRVSHRPGSAPPRASGASQLV 243
+ PRTWEW + G P +G S V
Sbjct: 276 LDPRTWEWNKVKKIGMPPSSRAGFSVCV 303
>At4g14410.2 68417.m02224 basic helix-loop-helix (bHLH) family
protein
Length = 277
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 320 KTCKSHLRRTRLGRFFQLHSTFMSPGGEPDKD 415
K C+ LRR +L F S+ + PG P D
Sbjct: 129 KACRERLRREKLNERFMDLSSVLEPGRTPKTD 160
>At4g14410.1 68417.m02223 basic helix-loop-helix (bHLH) family
protein
Length = 283
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 320 KTCKSHLRRTRLGRFFQLHSTFMSPGGEPDKD 415
K C+ LRR +L F S+ + PG P D
Sbjct: 135 KACRERLRREKLNERFMDLSSVLEPGRTPKTD 166
>At2g43630.1 68415.m05423 expressed protein
Length = 274
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +1
Query: 202 GSAPPRASGASQLVGGRTVREGR*IQGHHEEGGLAGRGPENLQ 330
G+ PPR G+ GG E R E+GGLAG E LQ
Sbjct: 126 GNMPPRGGGSG---GGGGNGEERPEGSGGEDGGLAGIADETLQ 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,216
Number of Sequences: 28952
Number of extensions: 327397
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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