Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30481
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    30   0.40 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.93 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   6.6  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 427 NCNPDTVESRLSSDGVLTVIAPRTPAARRTSELF-PSLKPVRSGRRLRSPLRKLRATKQN 603
           N NP T+ S + S    T  +   P+    S LF P+ +P+ + R+L     + ++   N
Sbjct: 245 NANPSTLFSSIPSSRHTT--SNHFPSNSAQSSLFSPTARPL-TARKLGFASSQTKSAVSN 301

Query: 604 NDSRNAVNQKSVACVNFI 657
           N SRN+    S    +FI
Sbjct: 302 NHSRNSSKDASFMMKSFI 319


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 385 YISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAP-RTPAARRTSELFPSLKPVRSGRR 561
           Y+   +    + PE+ N    +   S D +  V +P  +   RR  ++   + PV+   R
Sbjct: 173 YLDEDYVDGQSDPESSNASDSDFADSPDDLTKVRSPIPSRRGRRKRKMRGPILPVKKNLR 232

Query: 562 LRSPLRKLRATKQNNDSRNAVNQK 633
           ++  +  LRA + + D R  +  +
Sbjct: 233 VKKAMSPLRAERNSPDFRRKLRSR 256


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 379 HGYISRQFTRRYALPENCNPDT 444
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,162
Number of Sequences: 5004
Number of extensions: 54473
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)