Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30481
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0483 - 8804021-8804485 45 6e-05
03_02_0484 + 8805053-8805538 44 1e-04
03_02_0478 + 8775892-8776377 44 1e-04
03_02_0485 - 8808139-8808618 44 1e-04
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 42 7e-04
01_01_0229 - 1943473-1943922 41 0.001
01_01_0231 + 1951047-1951499 41 0.001
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 40 0.003
01_01_0227 + 1933247-1933699 36 0.026
06_01_1017 - 7951985-7952425 33 0.24
11_02_0041 - 7669692-7670312 33 0.32
02_01_0760 - 5639315-5639685,5640072-5640360 31 0.97
02_02_0077 - 6586638-6587165 31 1.3
03_05_0543 - 25404630-25405408,25405461-25405605 30 1.7
12_02_0046 + 12830974-12832386 29 3.9
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 3.9
02_05_0494 + 29486960-29487454 29 3.9
12_02_1174 - 26696869-26698191 29 5.2
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 5.2
06_03_0989 - 26663060-26663203,26663649-26663760,26664015-26664274 29 5.2
06_03_0988 + 26642247-26642506,26642790-26642872,26643150-266432... 29 5.2
>03_02_0483 - 8804021-8804485
Length = 154
Score = 45.2 bits (102), Expect = 6e-05
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Frame = +1
Query: 163 DGRHHANDVQRLLPAVEADGDGQ*RRRFHHHSNKDKFQVNLDVQHFSPEEISVKTADGYV 342
DG + L P +D R + DV EE+ V+ DG V
Sbjct: 22 DGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNV 81
Query: 343 I-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPDTVESRLSSDGVLTVIAPR 495
+ + G+ EE+ D+ + R +F RR+ LPEN P+ +++ + +GVLTV P+
Sbjct: 82 LQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 139
>03_02_0484 + 8805053-8805538
Length = 161
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 286 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 441
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 442 TVESRLSSDGVLTVIAPR 495
+++ + +GVLTV P+
Sbjct: 130 QIKASM-ENGVLTVTVPK 146
>03_02_0478 + 8775892-8776377
Length = 161
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Frame = +1
Query: 286 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 441
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 442 TVESRLSSDGVLTVIAPRTPAAR 510
+++ + +GVLTV P+ A +
Sbjct: 130 QIKASM-ENGVLTVTVPKEEAKK 151
>03_02_0485 - 8808139-8808618
Length = 159
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 286 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 441
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 442 TVESRLSSDGVLTVIAPR 495
+++ + +GVLTV P+
Sbjct: 128 QIKASM-ENGVLTVTVPK 144
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 286 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 441
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 442 TVESRLSSDGVLTVIAPR 495
V++ L +GVLTV P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 286 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 441
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 442 TVESRLSSDGVLTVIAPR 495
V++ + +GVLTV P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 286 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 441
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 442 TVESRLSSDGVLTVIAPR 495
V++ + +GVLTV P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Frame = +1
Query: 274 QVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDE------HGYISRQ----FTRRYALP 423
++ D+ S EE+ V D +++ G+H++ + E G+ + + R ALP
Sbjct: 145 RMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALP 204
Query: 424 ENCNPDTVESRLSSDGVLTVIAPRTPAARRTSEL 525
+ C+ V + L +GVL V P+T R+ ++
Sbjct: 205 DECDKSKVRAEL-KNGVLLVTVPKTEVERKVIDV 237
>01_01_0227 + 1933247-1933699
Length = 150
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 346 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAARRTSEL 525
V+GK++ER S +F RR+ LP D V + + +GVLTV P+ + +
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKEETKKPQLKA 145
Query: 526 FP 531
P
Sbjct: 146 IP 147
>06_01_1017 - 7951985-7952425
Length = 146
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 313 ISVKTADGYVIVEGKHEERQDEHGYISR----QFTRRYALPENCNPDTVESRLSSDGVLT 480
++V+ A + E + E +D +++ +F R ALP + + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 481 VIAPRTPAARR 513
V+ P+ PA R
Sbjct: 124 VVVPKEPAPAR 134
>11_02_0041 - 7669692-7670312
Length = 206
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 397 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAAR 510
+F RR+ +P + V +RL DGVLTV P+ P R
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHR 177
>02_01_0760 - 5639315-5639685,5640072-5640360
Length = 219
Score = 31.1 bits (67), Expect = 0.97
Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = +1
Query: 259 NKDKFQVNLDVQHFSPEEISVKTADGYVIVEGK-----HEER-QDEHG--YISRQFTRRY 414
+++++++ +V +++ V DG + + G+ E+R +D G + + +
Sbjct: 120 DEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAATYHAGL 179
Query: 415 ALPENCNPDTVESRLSSDGVLTVIAPRTPAARRT 516
LPE+ + + + + DGVL V PR+P +R+
Sbjct: 180 LLPEDAVAEGITAEVR-DGVLHVTVPRSPERKRS 212
>02_02_0077 - 6586638-6587165
Length = 175
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Frame = +1
Query: 283 LDVQHFSPEEISVKTADGYVIVEGKHEERQ----DEHG----YISRQ-----FTRRYALP 423
+D+ +P ++ V+ DG V+ R D+ G Y+ + F RR+ LP
Sbjct: 66 VDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLP 125
Query: 424 ENCNPDTVESRLSSDGVLTVIAPRTP 501
E+ + D V + DGVLTV + P
Sbjct: 126 ESADLDGVRAEY-KDGVLTVTVDKKP 150
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 265 DKFQVNLDVQHFSPEEISVKTAD-GYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 441
+ ++LD F EEI V + G++ G ER SR F + + LP +CN D
Sbjct: 39 NSIHLSLDQLGFKREEIRVLVDNHGHLRTRG---ERPVAGNRWSR-FQKDFQLPADCNVD 94
Query: 442 TVESRLSSDGVLTVIAPRTPA 504
+ ++ ++ + + +TP+
Sbjct: 95 GIRAKFENEALTITLPKKTPS 115
>12_02_0046 + 12830974-12832386
Length = 470
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +3
Query: 381 WLHLSSVHAALRSA*KLQP*HCRISVVLXXXXXXXXSQDSGCQKNERAVPITQTGPVRKE 560
WL + H LR A L+P CR+ V Q+S + P P
Sbjct: 126 WL-MEEYHLCLRQASDLEPVLCRVYVSPRAAKDSAAHQESAALTPQEPAPPLAHAPAPAP 184
Query: 561 IKEPTA 578
I+EP A
Sbjct: 185 IQEPAA 190
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +1
Query: 379 HGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAARRTSELFPSLKPVRSGR 558
HG Y LPE+ V SR S T +PR P R + L + + +
Sbjct: 80 HGLSLVPIDHGYRLPESPPRPRVASRRQSTHAPTAPSPRQP-GRLPAHLTVASRAAQPAS 138
Query: 559 RLRSPLR 579
RLR+P R
Sbjct: 139 RLRAPAR 145
>02_05_0494 + 29486960-29487454
Length = 164
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 394 RQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAARR 513
R ++ LPE+ D +R++ DGVLTV P+ +R
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKRKGKKR 144
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 277 VNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESR 456
V + + F E++ V+ D + ++ E G +F + LP+NC+ D V +R
Sbjct: 26 VEIALPGFRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRAR 84
Query: 457 LSSDGVLTVIAPRTPAA 507
D L + P AA
Sbjct: 85 F-DDHKLIITLPLVAAA 100
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/71 (28%), Positives = 25/71 (35%)
Frame = +1
Query: 157 SPDGRHHANDVQRLLPAVEADGDGQ*RRRFHHHSNKDKFQVNLDVQHFSPEEISVKTADG 336
S D RH + R E +GQ R+ N F VQH S EE +
Sbjct: 383 SSDSRHRRPEYGRGNSTSELGSEGQRRQESQQGRNGPTFNRRRGVQHMSEEEREARLRQM 442
Query: 337 YVIVEGKHEER 369
E E+R
Sbjct: 443 QADAEVHEEQR 453
>06_03_0989 - 26663060-26663203,26663649-26663760,26664015-26664274
Length = 171
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 376 EHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAARRTSELF 528
E G I+ F RRY PEN T+ +++D + P ARRT+E F
Sbjct: 31 ELGSIAAGFLRRYPAPENAGGVTI--AMATDAAAELADP----ARRTAETF 75
>06_03_0988 +
26642247-26642506,26642790-26642872,26643150-26643238,
26643478-26643551,26643783-26643833,26644512-26644588,
26644694-26645313
Length = 417
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 376 EHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAARRTSELF 528
E G I+ F RRY PEN T+ +++D + P ARRT+E F
Sbjct: 31 ELGSIAAGFLRRYPAPENAGGVTI--AMATDAAAELADP----ARRTAETF 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,080
Number of Sequences: 37544
Number of extensions: 393969
Number of successful extensions: 1308
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -