Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30481
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 68 7e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 65 7e-11
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 3e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 3e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 58 1e-08
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 56 3e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 42 4e-04
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.33
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 2.3
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.0
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 9.2
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 68.1 bits (159), Expect = 7e-12
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 441
DK ++ LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ +
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96
Query: 442 TVESRLSSDGVLTVIA 489
TV SR++ DG+L + A
Sbjct: 97 TVSSRITGDGLLHIEA 112
Score = 27.5 bits (58), Expect(2) = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 406 RRYALPENCNPDTVESRLSSDGVLTVIAPR 495
R + LP++ + D++ SRL DG L + A R
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKR 190
Score = 21.4 bits (43), Expect(2) = 1.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 268 KFQVNLDVQHFSPE 309
+F V LDV FSP+
Sbjct: 142 RFTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 64.9 bits (151), Expect = 7e-11
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +1
Query: 265 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 441
DKFQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDES 62
Query: 442 TVESRLSSDGVLTVIAPRTPAARRTSELFPSLK 540
++ +R++ DG+L V A + T P+ K
Sbjct: 63 SISTRIAEDGMLHVEALKKSPPATTENKAPATK 95
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 268 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDT 444
KF + LDV F PEE+ VK + V + E +EHG+ + RQF R + LP + DT
Sbjct: 99 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDT 156
Query: 445 VESRLSSDGVLTVIAPRTP 501
+ RL DGVL + A + P
Sbjct: 157 LVPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +1
Query: 283 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 462
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 463 SDGVLTVIA 489
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/104 (31%), Positives = 52/104 (50%)
Frame = +1
Query: 256 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 435
+ +DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP +
Sbjct: 93 AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVD 151
Query: 436 PDTVESRLSSDGVLTVIAPRTPAARRTSELFPSLKPVRSGRRLR 567
D++ +RL +G L A ++ A P+L PVR LR
Sbjct: 152 MDSLTTRLDKEGKLHFEAKKSVA--------PALPPVRELMVLR 187
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 432
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 433 NPDTVESRLSSDGVLTVIA 489
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 51.2 bits (117), Expect = 9e-07
Identities = 31/101 (30%), Positives = 50/101 (49%)
Frame = +1
Query: 265 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 444
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 445 VESRLSSDGVLTVIAPRTPAARRTSELFPSLKPVRSGRRLR 567
+ +RL +G L A + A P+L PVR + L+
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLK 188
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 432
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 433 NPDTVESRLSSDGVLTVIA 489
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 51.2 bits (117), Expect = 9e-07
Identities = 31/101 (30%), Positives = 50/101 (49%)
Frame = +1
Query: 265 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 444
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 445 VESRLSSDGVLTVIAPRTPAARRTSELFPSLKPVRSGRRLR 567
+ +RL +G L A + A P+L PVR + L+
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLK 188
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 432
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 433 NPDTVESRLSSDGVLTVIA 489
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 441
D+ ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 442 TVESRLSSDGVLTVIA 489
V++R+S+ G L + A
Sbjct: 298 NVKTRISNHGQLHIEA 313
Score = 51.2 bits (117), Expect = 9e-07
Identities = 31/101 (30%), Positives = 50/101 (49%)
Frame = +1
Query: 265 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 444
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 389
Query: 445 VESRLSSDGVLTVIAPRTPAARRTSELFPSLKPVRSGRRLR 567
+ +RL +G L A + A P+L PVR + L+
Sbjct: 390 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLK 422
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/95 (31%), Positives = 47/95 (49%)
Frame = +1
Query: 265 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 444
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 445 VESRLSSDGVLTVIAPRTPAARRTSELFPSLKPVR 549
+ +RL +G L A + A P+L PVR
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVR 182
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 432
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 433 NPDTVESRLSSDGVLTVIA 489
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 51.6 bits (118), Expect = 7e-07
Identities = 31/106 (29%), Positives = 52/106 (49%)
Frame = +1
Query: 265 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 444
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 445 VESRLSSDGVLTVIAPRTPAARRTSELFPSLKPVRSGRRLRSPLRK 582
+ +RL +G L A + A P+L PVR + L+ + +
Sbjct: 156 LTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLKDNISR 193
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 432
+N++K ++ LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE
Sbjct: 3 NNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 61
Query: 433 NPDTVESRLSSDGVLTVIA 489
V++R+S+ G L + A
Sbjct: 62 EASNVKTRISNHGQLHIEA 80
Score = 54.8 bits (126), Expect = 7e-08
Identities = 34/104 (32%), Positives = 52/104 (50%)
Frame = +1
Query: 256 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 435
S DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ LP +
Sbjct: 94 SKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVD 152
Query: 436 PDTVESRLSSDGVLTVIAPRTPAARRTSELFPSLKPVRSGRRLR 567
D++ +RL +G L A + A P+L PVR + LR
Sbjct: 153 MDSLTTRLDKEGKLHFEAKKRNA--------PALPPVRELKVLR 188
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 268 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI-SRQFTRRYALPE 426
KF + LDV F PEE+ VK + V + E +EHG+ +RQF R + LP+
Sbjct: 27 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.33
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 355 KHEERQDEHGYISRQFTRRYAL 420
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +1
Query: 415 ALPENCNPDTVESRLSSDGVLTVIAPRTPA---ARR---TSELFPSLK-PVRSGRRLRSP 573
++P CN +E + DG T + + RR T +++ +L+ P++ + L P
Sbjct: 1042 SVPSACNLGLIERSIGIDGTFTAVIGELKSENNLRRSSSTGDIYENLQHPLKCVKELCHP 1101
Query: 574 LRKLRATKQNNDSRNAVNQK 633
+ R K+ +RNAV +K
Sbjct: 1102 VAPPRLKKKLRQARNAVPEK 1121
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 349 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 480
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 319 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 426
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 594 ETKQ*LSERCESKKCSVC 647
E K+ LS RCES KC +C
Sbjct: 1244 ELKEHLSNRCESLKCKIC 1261
>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +1
Query: 541 PVRSGRRLRSPLRKLRATKQNNDSRNAVNQKSVACVNFI 657
P+RS + LRS + R++ + ++S +AVNQ+ + +++
Sbjct: 600 PLRSVKPLRSSSQATRSSSEPDESSDAVNQQLIHATDWL 638
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 75 CHCCHSSWDTNLTA--FAIRTS--GWRLLLTIS*R--PSSRQRCPEITTG 206
C CCH S+ ++ +A+ + G L+ R PS+R+RCP+ TG
Sbjct: 2062 CTCCHKSYHVGISCGDYALSKTEIGQEHLVEKWMREDPSNRKRCPKCRTG 2111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,332,603
Number of Sequences: 59808
Number of extensions: 440316
Number of successful extensions: 1435
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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