Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30481
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    30   0.027
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.3  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   5.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.3  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +1

Query: 277 VNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPEN--CNPDTVE 450
           + ++  +FS  E  V       I+ GK         + + ++   + LP N    PD VE
Sbjct: 23  IGINAANFSNFEDRVTMYVYEEIINGKKLTEIINETHENVKYLPGHKLPPNIIAIPDVVE 82

Query: 451 SRLSSDGVLTVIAPRTPAARRTSELFPSLKPVRSGRRL 564
           +   +D +LT + P     R  S LF  +KP   G  L
Sbjct: 83  AAKDAD-ILTFVVPHQFIKRICSALFGKIKPTAIGLSL 119


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 596 FVALNFRSGLLNLLPDRTGLSDGN 525
           FV +N+R G+L  L     +  GN
Sbjct: 153 FVTINYRLGILGFLSTEDEVVPGN 176


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 596 FVALNFRSGLLNLLPDRTGLSDGN 525
           FV +N+R G+L  L     +  GN
Sbjct: 24  FVTINYRLGILGFLSTEDEVVPGN 47


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 596 FVALNFRSGLLNLLPDRTGLSDGN 525
           FV +N+R G+L  L     +  GN
Sbjct: 153 FVTINYRLGILGFLSTEDEVVPGN 176


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 510 SGSRSPGSDHGQHAVRGQPRFDSVRVAVF 424
           SGS +PG+       +  P F   RVA +
Sbjct: 391 SGSSTPGTGREHDPAKFPPSFRISRVAAY 419


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 487 APRTPAARRTSELFP 531
           A  +PAAR TS ++P
Sbjct: 76  ASTSPAARTTSSMYP 90


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 250 HHSNKDKFQVNLDVQHFSPE 309
           H +N D++   L ++H SP+
Sbjct: 659 HVTNMDQYNSILMIEHLSPD 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,809
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)