Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30480
(780 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39) 112 3e-25
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46) 51 9e-07
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0) 49 5e-06
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 38 0.012
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24) 32 0.60
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 31 1.0
SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40) 29 4.2
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74) 29 5.6
SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07) 29 5.6
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_31823| Best HMM Match : HAMP (HMM E-Value=1) 28 7.4
SB_15006| Best HMM Match : Stig1 (HMM E-Value=2) 28 7.4
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_2468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_52550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
Length = 387
Score = 112 bits (270), Expect = 3e-25
Identities = 54/83 (65%), Positives = 69/83 (83%), Gaps = 1/83 (1%)
Frame = +3
Query: 519 KVEVHGEK-GVETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIG 695
KV V+ + E + TKNILIA+GSEVTPFPG+ DEK II+STGALSL +VPK +++IG
Sbjct: 59 KVTVYKDDLSTEVIKTKNILIATGSEVTPFPGIEIDEKHIISSTGALSLSTVPKNLVLIG 118
Query: 696 AGVIGLELGSVYQRLGADVTAID 764
AGVIG+ELGSV+ RLGA+VTA++
Sbjct: 119 AGVIGVELGSVWSRLGANVTAVE 141
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = +2
Query: 125 LVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVERTLL*EVL 280
+ R ++ + DLVVIGSGPGGYVAAIKAAQLGMKV + L EV+
Sbjct: 21 ITRQKVLHFSLLGEVDLVVIGSGPGGYVAAIKAAQLGMKVTVYKDDLSTEVI 72
>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
Length = 320
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +1
Query: 265 TLGGTCLNVGCIPSKALLHNSHLYHMA 345
TLGGTCLNVGC+PSKALLH S LY A
Sbjct: 291 TLGGTCLNVGCMPSKALLHASELYEAA 317
Score = 44.8 bits (101), Expect = 8e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2
Query: 170 DLVVIGSGPGGYVAAIKAAQLGMKVVSVE 256
D+++IG GPGGY AAI+A QLG+KV +E
Sbjct: 259 DVLIIGGGPGGYNAAIRAGQLGLKVACIE 287
>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
Length = 394
Score = 48.8 bits (111), Expect = 5e-06
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +3
Query: 543 GVETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAGVIGLELG 722
G + + K+ILIA+G V P + E I TS G LE +PKK+ V+GAG I +EL
Sbjct: 118 GDQLFSGKHILIATGG-VPSLPSIPGFEHGI-TSDGFFELEDLPKKVAVVGAGYIAVELA 175
Query: 723 SVYQRLGADVTAI 761
+ LG+ V+ +
Sbjct: 176 GILNALGSRVSLL 188
Score = 36.7 bits (81), Expect = 0.021
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 SLVRIATR-QYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVERTLL 268
S +RI+ R A D VVIG G GG +A +AA+ G+K V +E L
Sbjct: 35 SQMRISLRLMMAAVKAYDYVVIGGGSGGIASARRAAEFGVKAVVIEHARL 84
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 268 LGGTCLNVGCIPSKA 312
LGGTC+NVGC+P KA
Sbjct: 84 LGGTCVNVGCVPKKA 98
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 522 VEVHGEKGVETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAG 701
++ ++G ET+ T + + +P + ++ ITS SL P ++IGA
Sbjct: 719 IKATDKRGTETIMTAETFVLAMGLRPRYPNIPGAKEYGITSDDLFSLPYCPGTTVLIGAS 778
Query: 702 VIGLELGSVYQRLGADVTAI 761
+ LE +G DVT +
Sbjct: 779 YVSLECAGFLAAMGLDVTVV 798
>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 672 PKKMLVIGAGVIGLELGSVYQRLGADVTAIDS 767
P KMLVIG GV GL + + +GA V A D+
Sbjct: 158 PAKMLVIGGGVAGLSAMAHAKNMGAIVRAFDT 189
>SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)
Length = 284
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +2
Query: 173 LVVIGSGPGGYVAAIKAAQLGMKVVSVER 259
++VIGSGP G +A++AA LG +V+ +E+
Sbjct: 63 VLVIGSGPCGLRSALEAALLGAQVMVIEK 91
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 155 TTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVER 259
T ++VIG+GP G AI+ A LG +VV VE+
Sbjct: 551 TCEHLQVLVIGAGPIGLRTAIEMALLGAQVVVVEK 585
>SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 164 DADLVVIGSGPGGYVAAIKAAQL 232
+AD+V++G GP G A+IK QL
Sbjct: 7 EADVVIVGGGPAGLSASIKLKQL 29
>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 164 DADLVVIGSGPGGYVAAIKAAQLGMKVVSVER 259
+ D VVIGSG GG A A+ G K++ +E+
Sbjct: 85 EVDAVVIGSGIGGMTCASLLAKTGKKILVLEQ 116
>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +2
Query: 68 LNMGYKFLKLASPTFRSGSLVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVV 247
++ GY FL + T +S S + + +D D G G V I +A++GM
Sbjct: 962 IDEGYTFLIKLTSTSKSSSQTTLTMERMCKLYDGDYWYCVKGKGKRV-GIPSARMGMVTF 1020
Query: 248 SVERTLL*EVLVSML 292
+ R L E+ + ++
Sbjct: 1021 TTPRRFLTEIWLKII 1035
>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
Length = 595
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -2
Query: 335 YRCELCSKAFDGIHPTLRQ 279
Y+CE CSKAF H TLRQ
Sbjct: 519 YQCESCSKAFTN-HSTLRQ 536
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 552 SQHPSLRVLQLYLGHYSSYTFDKINLVLLKEHCDTSCEAFNSISF-IXHHLFKVKCNFTS 376
S+ L +L+ + + +D + ++ D SC +NS+S+ +++ K+ N S
Sbjct: 221 SEGTKLTILKDHKHYVQGVCWDPLGQYVVTNSSDRSCRLYNSLSYRCCYNINKLSANVMS 280
Query: 375 YNT 367
NT
Sbjct: 281 KNT 283
>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
Length = 604
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 235 HEGGLSRKDPTLGGTCLNVGCIPSKALLHNSHLYHMAKHD 354
H G L+ DPT GTC SK + H+S Y K++
Sbjct: 565 HTGTLASFDPTGHGTCYFRNGAVSKLITHSSTCYEHMKNN 604
>SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07)
Length = 170
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = -1
Query: 546 HPSLRVLQLYLGHYSSYTFDKINLVL-------LKEHCDTSCEAFNSISFIXHHLFKVKC 388
HP L V Y ++ D V + + C T+ E F+++ + H+ +K
Sbjct: 78 HPCLNVTCDYFAECEAFAADDAQCVCPRKCPSYVDQVCATNGETFDNLCLLKKHVCHIKG 137
Query: 387 NFTSYN 370
NFT Y+
Sbjct: 138 NFTFYH 143
>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 678 KMLVIGAGVIGLELGSVYQRLGADVTAIDS 767
K++++G+G+ GL Q G DVT +++
Sbjct: 252 KVIIVGSGIAGLMAARQLQSFGIDVTMVEA 281
>SB_31823| Best HMM Match : HAMP (HMM E-Value=1)
Length = 150
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 443 VRPLTALALYXIIFLKSNVTSPVTIPLCLKSCLAIW-YRCELCSKAFDGIHPTLRQVPPK 267
VR L +I ++ N ++ ++ + K+ L + Y C L D +HP R+ P+
Sbjct: 74 VRRLERTLNQLVIKIRHNSSAKGSLVIVPKTMLFVKNYTCLLNLTCADCLHPVFRRKKPR 133
Query: 266 VGS 258
VGS
Sbjct: 134 VGS 136
>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
Length = 991
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 603 KV*LQTQKRLEYFWYLQSQHPSLRVLQLYLGHYSSYTFDKINL 475
K L T + E F L H L L+LY+ H TF+ I+L
Sbjct: 125 KAYLNTHEFSEKFSLLDFMHLFLEALKLYVEHTDGNTFEDISL 167
>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Frame = -1
Query: 567 FWYLQSQHPSLRVLQLYLGHYSSYTFDKINLVL-------LKEHCDTSCEAFNSISFIXH 409
F L HP L V Y ++ D V + + C T+ E F+++ +
Sbjct: 294 FLSLVDIHPCLNVTCDYFAECEAFAADDAQCVCPRKCPSYVDQVCATNGETFDNLCRLKK 353
Query: 408 HLFKVKCNFTSYN 370
H+ +K NFT Y+
Sbjct: 354 HVCHIKGNFTFYH 366
>SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 274 GTCLNVGCIPSKALLHNSHLYHMAKHDFKQRGIVTGEVTFDFKKMMXYKANAVKGLTGGI 453
G + C+P K ++ + + H +G+VT +V + + K +N +K G
Sbjct: 67 GNAMPTSCVPEKRCGTHAPGWMVGAHPTVAQGMVTRKVCYHWTKNCCRWSNYIKVRNCGA 126
Query: 454 AMLFQ--KNKVNLVKGVGTIVPQ 516
++Q K V ++ G +PQ
Sbjct: 127 FYVYQLPKTPVCWLRYCGNGIPQ 149
>SB_2468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -2
Query: 368 PLCLKSCLAIWYRCELCSKAFDGIHPTLRQVPPKVGSFLLRPP 240
P C +W C S AFD H T + G L +PP
Sbjct: 184 PFCFSCHPPLWDLCAQLSTAFDRRHDTQDKQTLIFGKLLAKPP 226
>SB_52550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 274 GTCLNVGCIPSKALLHNSHLYHMAKHDFKQRGIVTGEVTFDFKKMMXYKANAVKGLTGGI 453
G + C+P K ++ + + H +G+VT +V + + K +N +K G
Sbjct: 199 GNAMPTSCVPEKRCGTHAPGWMVGAHPTVAQGMVTRKVCYHWTKNCCRWSNYIKVRNCGA 258
Query: 454 AMLFQ--KNKVNLVKGVGTIVPQ 516
++Q K V ++ G +PQ
Sbjct: 259 FYVYQLPKTPVCWLRYCGNGIPQ 281
>SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 283 LNVGCIPSKALLHNSHLYHMAKHDFKQRGIVTGEVTFDFKKMMXY 417
L C+P ++ ++ + +AKHD E TF F K+M +
Sbjct: 124 LQSACVPDHYIVQKNYRFFLAKHDGSLH--FAREATFAFYKIMSF 166
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,990,181
Number of Sequences: 59808
Number of extensions: 500922
Number of successful extensions: 1521
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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