Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30479
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 150 2e-37
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 146 4e-36
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 133 2e-32
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 128 9e-31
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 111 1e-25
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 68 1e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 53 4e-08
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 35 0.015
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.98
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 4.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.2
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 26 6.9
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 9.2
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.2
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 150 bits (364), Expect = 2e-37
Identities = 68/82 (82%), Positives = 76/82 (92%)
Frame = +3
Query: 510 IINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGSE 689
IINEPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLG E
Sbjct: 170 IINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 229
Query: 690 DFDNRMVNHFVQEFKRKYKKDL 755
DFD+R+VNHF+QEFKRK KKD+
Sbjct: 230 DFDSRLVNHFIQEFKRKNKKDI 251
Score = 147 bits (357), Expect = 1e-36
Identities = 68/80 (85%), Positives = 75/80 (93%)
Frame = +2
Query: 14 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 193
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 194 TIFDAKRLIGRKFEDATVQA 253
TIFDAKRLIGRKF+D VQ+
Sbjct: 64 TIFDAKRLIGRKFDDPEVQS 83
Score = 140 bits (339), Expect = 2e-34
Identities = 65/87 (74%), Positives = 75/87 (86%)
Frame = +1
Query: 250 SRMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVI 429
S MKHWPF+V+S GKP ++V YKGE KTF PEE+SSMVL KM+ETAEAYLG V +AV+
Sbjct: 83 SDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVV 142
Query: 430 TVPAYFNDSQRQATKDAGTISGLNVLQ 510
TVPAYFNDSQRQATKDAG I+GLNVL+
Sbjct: 143 TVPAYFNDSQRQATKDAGLIAGLNVLR 169
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 146 bits (353), Expect = 4e-36
Identities = 67/82 (81%), Positives = 74/82 (90%)
Frame = +3
Query: 510 IINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGSE 689
IINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLG E
Sbjct: 170 IINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 229
Query: 690 DFDNRMVNHFVQEFKRKYKKDL 755
DFD+R+VNHF QEFKRK KKD+
Sbjct: 230 DFDSRLVNHFAQEFKRKNKKDI 251
Score = 145 bits (352), Expect = 5e-36
Identities = 67/80 (83%), Positives = 74/80 (92%)
Frame = +2
Query: 14 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 193
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 194 TIFDAKRLIGRKFEDATVQA 253
TIFDAKRLIGR+F D VQ+
Sbjct: 64 TIFDAKRLIGRRFNDPEVQS 83
Score = 134 bits (325), Expect = 1e-32
Identities = 62/87 (71%), Positives = 74/87 (85%)
Frame = +1
Query: 250 SRMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVI 429
S MKHWPF+V+ GKP I+V +KGE KTF PEE+SSMVL KM+E+AEA+LG V +AV+
Sbjct: 83 SDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVV 142
Query: 430 TVPAYFNDSQRQATKDAGTISGLNVLQ 510
TVPAYFNDSQRQATKDAG I+GLNVL+
Sbjct: 143 TVPAYFNDSQRQATKDAGLIAGLNVLR 169
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 133 bits (322), Expect = 2e-32
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +3
Query: 510 IINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGSE 689
IINEPTAAAIAYGLD K +NVLIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLG E
Sbjct: 174 IINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGE 233
Query: 690 DFDNRMVNHFVQEFKRKYKKDLA 758
DFDN +V HF+QEFKRK K D++
Sbjct: 234 DFDNALVEHFIQEFKRKQKIDIS 256
Score = 131 bits (317), Expect = 9e-32
Identities = 59/79 (74%), Positives = 68/79 (86%)
Frame = +2
Query: 14 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 193
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 194 TIFDAKRLIGRKFEDATVQ 250
T+FDAKRLIGR++ED Q
Sbjct: 68 TVFDAKRLIGRRYEDPETQ 86
Score = 118 bits (284), Expect = 9e-28
Identities = 55/85 (64%), Positives = 68/85 (80%)
Frame = +1
Query: 256 MKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITV 435
+KHWPF+V+ + G P I+V Y GE K F +E+S+MVLTKMKE +EA L K V+ AVITV
Sbjct: 89 IKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITV 148
Query: 436 PAYFNDSQRQATKDAGTISGLNVLQ 510
PAYF+DSQR ATKDAG I+GLNVL+
Sbjct: 149 PAYFSDSQRAATKDAGAIAGLNVLR 173
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 128 bits (309), Expect = 9e-31
Identities = 57/77 (74%), Positives = 67/77 (87%)
Frame = +2
Query: 17 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 196
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 197 IFDAKRLIGRKFEDATV 247
IFD KRLIGRKF++ T+
Sbjct: 98 IFDIKRLIGRKFDEKTM 114
Score = 120 bits (290), Expect = 2e-28
Identities = 54/88 (61%), Positives = 73/88 (82%)
Frame = +1
Query: 247 ASRMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAV 426
A +K +PF +V+D +P ++V G+ K F PEE+S+M+L+KMK+TAEAYLGK V +AV
Sbjct: 115 AKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAV 174
Query: 427 ITVPAYFNDSQRQATKDAGTISGLNVLQ 510
+TVPAYFND+QRQATKDAGTI+GLNV++
Sbjct: 175 VTVPAYFNDAQRQATKDAGTIAGLNVIR 202
Score = 117 bits (281), Expect = 2e-27
Identities = 50/82 (60%), Positives = 70/82 (85%)
Frame = +3
Query: 510 IINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGSE 689
I+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS+L+I++G+FEV +T+GDTHLG E
Sbjct: 203 IVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGE 261
Query: 690 DFDNRMVNHFVQEFKRKYKKDL 755
DFDNR++N+ + + RK D+
Sbjct: 262 DFDNRVINYLARTYNRKNNVDV 283
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 111 bits (266), Expect = 1e-25
Identities = 51/86 (59%), Positives = 65/86 (75%)
Frame = +3
Query: 510 IINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGSE 689
++NEPTAAA+AYGLDKK + V +FDLGGGTFD+SIL + +G+FEV+ST GDTHLG E
Sbjct: 216 VVNEPTAAALAYGLDKKN--DAIVAVFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGE 273
Query: 690 DFDNRMVNHFVQEFKRKYKKDLATTR 767
DFD +V H V+ FK+ DL+ R
Sbjct: 274 DFDVALVRHIVETFKKNEGLDLSKDR 299
Score = 97.9 bits (233), Expect = 1e-21
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +2
Query: 5 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 181
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 182 NPNNTIFDAKRLIGRKFEDATVQ 250
NP NT F KRLIGR+F++ VQ
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQ 131
Score = 91.1 bits (216), Expect = 2e-19
Identities = 40/60 (66%), Positives = 50/60 (83%)
Frame = +1
Query: 331 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLQ 510
KT+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVL+
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLR 215
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/83 (34%), Positives = 52/83 (62%)
Frame = +2
Query: 2 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 181
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 182 NPNNTIFDAKRLIGRKFEDATVQ 250
N NT+ KRL GR ++D ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEIK 85
Score = 67.7 bits (158), Expect = 2e-12
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +3
Query: 510 IINEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 677
++N+ AAA+ YG+ K E R V I D G + VSI+ G F +KST D +
Sbjct: 174 LMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRN 233
Query: 678 LGSEDFDNRMVNHFVQEFKRKYKKDL 755
LGS + D ++++F EFK KYK D+
Sbjct: 234 LGSRNMDKALIDYFAAEFKEKYKIDV 259
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = +1
Query: 307 KVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGT 486
KV Y E+ F ++ + TK+K AEA L +V + VI++PA+F D QR+A +A
Sbjct: 106 KVQYLNEETAFSNIQLIAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAAN 165
Query: 487 ISGLNVLQ 510
I+GLN L+
Sbjct: 166 IAGLNPLR 173
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 53.2 bits (122), Expect = 4e-08
Identities = 21/77 (27%), Positives = 45/77 (58%)
Frame = +2
Query: 17 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 196
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 197 IFDAKRLIGRKFEDATV 247
+ + + L+G+ ++ T+
Sbjct: 87 VTNFRDLLGKSHDELTL 103
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +1
Query: 325 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 504
++K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL V
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPV 193
Query: 505 LQ 510
LQ
Sbjct: 194 LQ 195
Score = 47.2 bits (107), Expect = 3e-06
Identities = 19/77 (24%), Positives = 46/77 (59%)
Frame = +3
Query: 510 IINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGSE 689
+I++P A +A ++ ++ V++ + G +VS+++++ G+ + ++ D +LG E
Sbjct: 196 LIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHDENLGGE 255
Query: 690 DFDNRMVNHFVQEFKRK 740
+ +VN F +EF++K
Sbjct: 256 QLTDVLVNFFAKEFEKK 272
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 34.7 bits (76), Expect = 0.015
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 17 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 193
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P +
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84
Query: 194 TIFDAKRLI 220
+I + K L+
Sbjct: 85 SIRNVKELL 93
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +1
Query: 325 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 504
+++ + EE+ +M + AE + + + V+TVP +FN+ QR +A I +V
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHV 190
Query: 505 L 507
L
Sbjct: 191 L 191
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 9 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 104
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 760 VARSFLYFLLNSWTKWLTMRLSKSSL 683
V + ++ FL SW KWL + + +S L
Sbjct: 137 VEQKWIQFLHKSWMKWLHISIQESQL 162
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 549 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGSEDFDNRMVNHF 719
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = -2
Query: 697 SKSSLPKWVSPA-VDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 551
S SSLP P + IP PPPRS ST R P P S
Sbjct: 332 SNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 584 KYISFS-STLFVKTVSNRSSSRFIDDWRTFKPEMVP 480
K+I+F +KT S R S+ DW + P +VP
Sbjct: 69 KFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVP 104
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 697 SKSSLPKWVSPAVDFTSKIPSSMVRMDTSKVPPP 596
S SS+ PA++FTS I + + ++ + P P
Sbjct: 178 SASSVISCTPPAINFTSDICNEQIELEYKRKPIP 211
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 352 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 474
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 601 AVPSTCPSLPSRMVSSR*NPPPATPTW 681
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,885
Number of Sequences: 5004
Number of extensions: 75517
Number of successful extensions: 304
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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