Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30478
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   108   4e-25
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   5.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   7.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.3  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  108 bits (260), Expect = 4e-25
 Identities = 50/89 (56%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
 Frame = +2

Query: 29  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 208
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 209 HYKGQQVGKVMQVYRKSLLYTL-RGFKEK 292
             KG++ GK+  VYRK  L  + R  +EK
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREK 88



 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 27/46 (58%), Positives = 36/46 (78%)
 Frame = +1

Query: 256 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRR 393
           KF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 76  KFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 316 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 438
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 438 VFTLVFAKCSQSALCSAIEDCFAVFIH 358
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +1

Query: 4    CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 123
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,888
Number of Sequences: 5004
Number of extensions: 40620
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)