Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30478
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 113 8e-26
12_01_0323 - 2459854-2460306 113 1e-25
11_01_0317 - 2365493-2365786,2365825-2365953 81 4e-16
08_01_0391 + 3443989-3444219 30 1.0
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 27 7.1
02_02_0690 + 12990591-12990746,12990807-12990902,12991667-12992089 27 7.1
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 27 9.4
>01_01_0263 + 2136858-2137331
Length = 157
Score = 113 bits (272), Expect = 8e-26
Identities = 58/89 (65%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Frame = +2
Query: 29 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 208
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 209 HYKGQQVGKVMQVYRKS-LLYTLRGFKEK 292
YKG++ GKV+QVYR+ +++ R +EK
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREK 88
Score = 82.2 bits (194), Expect = 2e-16
Identities = 38/61 (62%), Positives = 50/61 (81%)
Frame = +1
Query: 256 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGK 435
++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A+GR A K KGK
Sbjct: 76 RWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGK 133
Query: 436 Y 438
+
Sbjct: 134 F 134
>12_01_0323 - 2459854-2460306
Length = 150
Score = 113 bits (271), Expect = 1e-25
Identities = 58/89 (65%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Frame = +2
Query: 29 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 208
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 209 HYKGQQVGKVMQVYRKS-LLYTLRGFKEK 292
YKG++ GKV+QVYR+ +++ R +EK
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREK 88
Score = 81.4 bits (192), Expect = 4e-16
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +1
Query: 256 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGK 435
++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK
Sbjct: 76 RWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGK 133
Query: 436 Y 438
+
Sbjct: 134 F 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 81.4 bits (192), Expect = 4e-16
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +1
Query: 256 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGK 435
++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK
Sbjct: 63 RWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGK 120
Query: 436 Y 438
+
Sbjct: 121 F 121
Score = 75.8 bits (178), Expect = 2e-14
Identities = 47/89 (52%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Frame = +2
Query: 29 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 208
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+N VVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRG 47
Query: 209 HYKGQQVGKVMQVYRKS-LLYTLRGFKEK 292
YKG++ GKV+QVYR+ +++ R +EK
Sbjct: 48 SYKGRE-GKVVQVYRRRWVIHVERITREK 75
>08_01_0391 + 3443989-3444219
Length = 76
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 327 VNADICCCTIGLFSLNPLNVYNKLLRYTCITLPTCWPL 214
++AD+CCC+ L + V LL + C+ L TC+ L
Sbjct: 41 MDADLCCCSCALIGI-AATVAASLLAFKCL-LTTCYKL 76
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +3
Query: 315 CRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSH 461
C H+ K C C + E + Q+ R + Q ++ I R HS+
Sbjct: 479 CNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRSAVHSN 527
>02_02_0690 + 12990591-12990746,12990807-12990902,12991667-12992089
Length = 224
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 297 GLFSLNPLNVYNKLLRYTCITLPTCWP 217
GL + P ++ +LL TC++L WP
Sbjct: 169 GLTHMPPTIIFRRLLSTTCLSLANRWP 195
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = +2
Query: 32 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 193
+F + ++S++ ++F I+ + L + R+K S+P+ R D V
Sbjct: 42 EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101
Query: 194 QVVRGHYKGQQVGKVMQVYR 253
QV+ G KG +VG+V ++++
Sbjct: 102 QVIAGREKG-KVGEVTRLFK 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,907,732
Number of Sequences: 37544
Number of extensions: 266258
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -