Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30478
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   5e-30
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.8  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   2.4  
SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)                       29   3.1  
SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)            28   5.4  
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           28   5.4  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_29853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              27   7.2  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  127 bits (307), Expect = 5e-30
 Identities = 58/76 (76%), Positives = 69/76 (90%)
 Frame = +2

Query: 29  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 208
           MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 209 HYKGQQVGKVMQVYRK 256
           H+K QQVGKV+QVYRK
Sbjct: 61  HFKSQQVGKVIQVYRK 76



 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 38/56 (67%), Positives = 47/56 (83%)
 Frame = +1

Query: 256 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 423
           K+V++I+RIQREKANGAT  VGIHPSK  IVKLK++KDRK ILDR+ + +LA  GK
Sbjct: 77  KWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 29  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 181
           MK + Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 300 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 464
           W N IC     ++C C+V DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 474 LRGLHGCGSFLGVFTLVFAKCSQS 403
           L GLH CG  +     VFAKC Q+
Sbjct: 72  LVGLHPCGDLVPTMLKVFAKCDQA 95


>SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)
          Length = 731

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +2

Query: 32  KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSS-PLSKELRQKFNVKSMP-IRKDDEVQVVR 205
           K N   TS+   +  RH    + ++ + M +  L  E  Q    +  P  +KDD++ V+R
Sbjct: 335 KINFAATSTSTFSAGRHRPVGNPLKSIHMKALNLQLEKLQAERARGEPHTQKDDQI-VIR 393

Query: 206 GHYKGQQVGKVMQVYRKSLLYTLRGFKEKRPMV 304
            +Y G Q G  +   R S+L      ++ +P V
Sbjct: 394 HYYSGIQRGDEIINVRDSVLLKAGTRRKDQPFV 426


>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 13  GEERQNEVQQAGDFLKK--EKQEEAFQCSFTYKASVDVLSPV*GTKTKIQ 156
           G E++    +A ++ KK  E  +  F C   Y  +V  +    GTKTKIQ
Sbjct: 163 GNEKKKFTYEALEYAKKSVELDDRDFACHKWYAITVSNVGDFEGTKTKIQ 212


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 4    CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTY 102
            C F EER    QQ G   K E+ ++AF  +  Y
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAFGFNTIY 2615


>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
          Length = 606

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 35  FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 187
           F+    S  +K+ +R+F   +HI + + +S  SK+ ++    K    + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 1    PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP 129
            PCRFGE   N++     F +    + A  CSF       + SP
Sbjct: 1239 PCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASP 1281


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 391 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQT 257
           C  G +  +   ST  +  L+G+ CR M+L HWP  F  +  + + +T
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDET 372


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 95  SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 256
           + ++++   + + K LR+    K+MP R+D+++Q  V    YK ++VG+  +  R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194


>SB_29853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 238 DAGVS*KFVVYIERIQREKANGATAYVGI 324
           D  VS KF+V+I R+Q EK       +G+
Sbjct: 67  DFNVSMKFIVFIARVQTEKFRSLACCLGL 95


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 233 KVMQVYRKSLLYTLRGFKEKRPMVQQHMSAF 325
           K  +   KSL+Y    FK KRP V +  SAF
Sbjct: 188 KPTEAANKSLIYEPSRFKPKRPSVSKLKSAF 218


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 88  CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 183
           CS   K  ++ L+ + GT  KI+ K HA+S++
Sbjct: 72  CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 432 TLVFAKCSQSALCSAIEDCFAVFI 361
           T+  + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244


>SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +2

Query: 20  SDRMKFN--KQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEV 193
           S  ++F+  K+  S ++ + K+H S+  HI+ +     + K   +  N+K++  + +   
Sbjct: 84  SGNLRFDACKETLSKKKSSIKKHVSSAKHIKSI---ENIKKSKTKDQNIKNILTKSN--- 137

Query: 194 QVVRGHYKGQQVGKVMQVYRKSLLYTL 274
               G  KG  + + M++YR  L+  L
Sbjct: 138 ----GAAKGATLPEDMRIYRYELVEAL 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,282,174
Number of Sequences: 59808
Number of extensions: 326214
Number of successful extensions: 958
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)