Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30478
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           124   5e-29
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   118   2e-27
At1g28070.1 68414.m03436 expressed protein ; expression supporte...    28   3.4  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   6.0  
At2g24000.1 68415.m02867 serine carboxypeptidase S10 family prot...    27   7.9  

>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  124 bits (298), Expect = 5e-29
 Identities = 63/89 (70%), Positives = 76/89 (85%), Gaps = 1/89 (1%)
 Frame = +2

Query: 29  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 208
           MKFN +V+SSRRKNRK HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 209 HYKGQQVGKVMQVY-RKSLLYTLRGFKEK 292
            +KG++ GKVMQVY RK +++  R  +EK
Sbjct: 61  TFKGRE-GKVMQVYRRKWVIHIERITREK 88



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 32/59 (54%), Positives = 47/59 (79%)
 Frame = +1

Query: 256 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 432
           K+V++IERI REK NG+T  VG++ S  +I KL+++KDRK++L+R+A GR AA  K+KG
Sbjct: 76  KWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR-AAADKEKG 133


>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  118 bits (285), Expect = 2e-27
 Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
 Frame = +2

Query: 29  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 208
           MK+N +VTSSRRKNRK HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 209 HYKGQQVGKVMQVY-RKSLLYTLRGFKEK 292
            YKG++ GKV+QVY RK +++  R  +EK
Sbjct: 61  TYKGRE-GKVVQVYRRKWVIHIERITREK 88



 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 37/59 (62%), Positives = 48/59 (81%)
 Frame = +1

Query: 256 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 432
           K+V++IERI REK NG T  VGI PSK VI KL+++KDRK++L+R+AKGR AA  K+KG
Sbjct: 76  KWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR-AAADKEKG 133


>At1g28070.1 68414.m03436 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 53  SSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVG 232
           S R      HFS PSH+ + L     + E+  +     M +++D    + RG+Y  Q  G
Sbjct: 38  SDRFLELSSHFSVPSHLEQCL--DLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSG 95

Query: 233 K 235
           +
Sbjct: 96  E 96


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 54   PQEGKTGRGISVLLHI 101
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


>At2g24000.1 68415.m02867 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 474

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 212 YKGQQVGKVMQVYRKSLLYTLRGFKEKRPMVQQHMSAFTLQS 337
           Y G QVG   +VY      T+RG   + P  Q   +   L+S
Sbjct: 422 YSGNQVGGRTEVYEGLTFVTVRGAGHEVPFFQPQSALILLRS 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,722
Number of Sequences: 28952
Number of extensions: 217324
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)