Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30477
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    29   0.30 
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    26   2.8  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   2.8  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    26   3.7  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.7  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.4  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   8.4  

>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 194 SAILNSDGTLNMDVALAKLPLVLINLKP 277
           + + N DGT+  D+A   +P +LIN++P
Sbjct: 35  NTVRNMDGTIAADLARTLIPAMLINMQP 62


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 264 INTRGSFASATSMFSVPSEFKIA-DLLKKQSTNFL 163
           INT   FASA+++FS+  ++ +  D    Q T +L
Sbjct: 115 INTYLEFASASNLFSIIEQYDVVLDCTDNQYTRYL 149


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 266 LLTPEEVLLAQHPCSVYHLSSRLRIC*KSKARIS*KLYLRSTVQSSLH 123
           L++ EE++       +  L+ + ++C KS++ IS ++   S  QS LH
Sbjct: 144 LMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEIIFLSKRQSVLH 191


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 178 LLFQQIRNLELRWYTEHGCCASKTSSGVNKSEAQSVLEQ 294
           L F +++ +++R   +HG  A +  SG+ K ++ +  EQ
Sbjct: 70  LQFDRVQAIDVRTKEKHGYYAVQVGSGIRKPKSITKAEQ 108


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 32  NVHLTETQKEKAKQYTSECVKESGVSTEVINAAK 133
           N H++E  KE+A++Y  E   ES  +T      K
Sbjct: 17  NPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 241  SKTSSGVNKSEAQSVLEQCKDKTGQDAADKAFE 339
            S+T S +NK EA+ V+ Q +    +D   KAF+
Sbjct: 1056 SETESELNKKEAELVIFQKEITEYRDQLHKAFQ 1088


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 198 ADLLKKQSTNFLKA-LSSEYCPVFAAFITSVLTPDSLT 88
           A L   Q TN +    SS  CP+F    T+ +TP + T
Sbjct: 37  AVLESSQDTNSVGGEASSTACPLFTTIYTNGITPGTTT 74


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 308 VLSLHCSSTLWASDLLTPEEVLLAQHPCS 222
           V+ +HC S    +  + PEE+    HP S
Sbjct: 388 VMDMHCESLRKTNLSVKPEEITSRPHPLS 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,784
Number of Sequences: 5004
Number of extensions: 33808
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)