Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30477
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           32   0.23 
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409...    27   6.4  

>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +2

Query: 23  GADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI 202
           G D ++L E  +    +     V+       + NAAK   Y E K   K ++C F K   
Sbjct: 45  GEDKINLEEMLRHAEPEVPMGSVRGLNNFEALQNAAKEVMYDESKGCNKKIVCEFGKVTK 104

Query: 203 LNSDGTLNMDVALAKLP 253
             S GT    +   K P
Sbjct: 105 KPSKGTKRKKLEKTKKP 121


>02_04_0258 +
           21339682-21339806,21340635-21340730,21340905-21340980,
           21341085-21341143,21341280-21341380,21341447-21341773,
           21341861-21342021,21342100-21342303,21342735-21342966,
           21343629-21344239
          Length = 663

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 23  GADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYS 148
           G+ N H   +Q  KA Q ++    E+  ST   N  + G+Y+
Sbjct: 436 GSSNTHKQLSQPAKAGQTSTGTTSEADGSTSAYNGNQAGRYA 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,037,309
Number of Sequences: 37544
Number of extensions: 194777
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)