Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30477
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    32   0.31 
SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)                27   6.6  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    27   8.7  

>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -2

Query: 341 ISKALSAASCPVLSLHCSSTLWASDLLTPEEVLLA 237
           +S  +S AS PVLS H     W SD++TP E  LA
Sbjct: 512 VSPLVSRASSPVLSAHSQ---WNSDIITPHENQLA 543


>SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 104 VSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGTLNMDVALAKLPLVLIN 268
           V  + +   K  + +  KA+ KF   F N +     +G L +++ +   P VL+N
Sbjct: 229 VRKKPVPVLKDARANNHKAYIKFDKLFINDALYTGPEGYLILEITIEDSPFVLVN 283


>SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = +2

Query: 29  DNVHLTETQKEKAKQYTS--ECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI 202
           D+  + + +K  AK + S  E V E+    +V      G Y  D+   K    FFNKS +
Sbjct: 354 DSDFVLDVKKTAAKFHLSWLEQVCENKFGEDVYLNPSIGTYLNDETGAKLKSLFFNKSQL 413

Query: 203 LNSDGTLNMDVALAKLPLVLINLKPKAY*NSARIRPGKTQ 322
            +    ++  V  A   +++      A     R + GKT+
Sbjct: 414 CDFRFRVDGQVVFAHKVVLMARCDVMAAMLGGRFKEGKTE 453


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 32  NVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSE 151
           N HL     E+   ++ +C+K + + ++ ++  KTG+  E
Sbjct: 253 NAHLVHADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPE 292


>SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 59  EKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFV-LCFFNKSAILNSDGTLNMDV 235
           EK      + VK SG++  V   +K G+YS  +AF   + L     S +L +D  L M  
Sbjct: 447 EKHDLDLEDAVKTSGIAEIVKTVSKPGKYSRREAFNVAINLVTDPNSIVLLTDLHLEMTS 506

Query: 236 ALAK 247
            L K
Sbjct: 507 LLLK 510


>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 904

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 329 LSAASCPVLSLHCSSTLWASDLLTPEEVLLAQHPCSVYHLSSR 201
           L   S P+ +    S   +S  L P+ +LLA HP  +YH + R
Sbjct: 623 LPTFSHPMGATSLISPTHSSPRLPPDPLLLAGHPSGIYHPALR 665


>SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +1

Query: 217 YTEHGCCASKTSSGVNKSEAQSVL----EQCKDKTGQDAADKA-FEIFQCYYK 360
           + +H CC S T+  +      ++     +QC  K    A  K  FE+  C+Y+
Sbjct: 56  WKDHACCKSNTTKHIESDGTITLYRMRWDQCPQKRAMSAKCKRFFEMDTCFYE 108


>SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)
          Length = 352

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 38  HLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKA 160
           H  +T+K+   + + E  K S V T+  NAAKTG   E  A
Sbjct: 190 HSPKTRKKFEARLSEEEGKVSHVRTQYENAAKTGMLDEATA 230


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 20   CGADNVHLTETQKEKAKQYTSECVKESGVS 109
            C   +V +TE+Q  ++K + +E  K  G+S
Sbjct: 1110 CSYPSVSITESQANQSKSFPTEYTKAQGIS 1139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,518
Number of Sequences: 59808
Number of extensions: 232105
Number of successful extensions: 649
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)