Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30477
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79360.1 68414.m09248 transporter-related low similarity to S...    30   1.0  
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    29   1.3  
At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SD...    29   1.3  
At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SD...    29   1.3  
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    27   7.1  
At1g03780.2 68414.m00358 targeting protein-related similar to mi...    27   7.1  
At1g03780.1 68414.m00359 targeting protein-related similar to mi...    27   7.1  

>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 372 CLGPFVVALEDLEGFIGCVLPGLILA 295
           C G FV  L +   F+GC++ GL+L+
Sbjct: 107 CAGSFVKGLPESSFFVGCLIGGLVLS 132


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 242 LAQHPCSVYHLSSRLRIC 189
           +A+ PCS++HLSS  R+C
Sbjct: 831 IAELPCSIFHLSSLRRLC 848


>At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SDR)
           family protein similar to tropinone reductase-I
           GI:424160 from [Datura stramonium]
          Length = 262

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 41  LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 178
           L +  K  A ++  + ++ + V+  VIN   +  Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211


>At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SDR)
           family protein similar to tropinone reductase-I
           GI:424160 from [Datura stramonium]
          Length = 307

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 41  LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 178
           L +  K  A ++  + ++ + V+  VIN   +  Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 92  KESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGTLNMDVALAKLP 253
           K   V  +++ + +  +YS D+   K  + FF K    +S+  L  + A   LP
Sbjct: 379 KGRDVGEDLVKSLQNTKYSVDEKLDKTFINFFGKKTSASSETKLKAEDAYHSLP 432


>At1g03780.2 68414.m00358 targeting protein-related similar to
           microtubule-associated protein / targeting protein for
           Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
           Restricted expression proliferation associated protein
           100 (p100) (Differentially expressed in lung cells 2)
           (DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
           (C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
           sapiens}
          Length = 725

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 155 KAFKKFVLCFFNKSAILNSDGTLNMDVALAKL-PLVLINLKPKAY*NSARIRPGKTQPIK 331
           ++FK   +C FN++     + TL     L  + P+V +  +P      A + P K   +K
Sbjct: 66  RSFKVEAMCNFNEA----EEETLKDKEPLEPVVPIVSLQSQPSQA-KKAEVAPSKASTVK 120

Query: 332 PSRSSN 349
           PSR S+
Sbjct: 121 PSRISS 126


>At1g03780.1 68414.m00359 targeting protein-related similar to
           microtubule-associated protein / targeting protein for
           Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
           Restricted expression proliferation associated protein
           100 (p100) (Differentially expressed in lung cells 2)
           (DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
           (C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
           sapiens}
          Length = 687

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 155 KAFKKFVLCFFNKSAILNSDGTLNMDVALAKL-PLVLINLKPKAY*NSARIRPGKTQPIK 331
           ++FK   +C FN++     + TL     L  + P+V +  +P      A + P K   +K
Sbjct: 66  RSFKVEAMCNFNEA----EEETLKDKEPLEPVVPIVSLQSQPSQA-KKAEVAPSKASTVK 120

Query: 332 PSRSSN 349
           PSR S+
Sbjct: 121 PSRISS 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,650
Number of Sequences: 28952
Number of extensions: 168821
Number of successful extensions: 504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)