Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30476
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    31   0.23 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.8  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   2.8  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   4.8  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   6.4  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    25   8.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.5  

>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 511 ETTAEKAENDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQG 690
           E + +K E DE+ + +   K   ++ V  N             +PVP+ NE  E +A  G
Sbjct: 108 EDSEDKKEEDESSSYKNEFKSSSSASVSSNFEKTSGSDDHNSQSPVPL-NEGFEYIASSG 166

Query: 691 SPEKEASPD 717
           S +K +  +
Sbjct: 167 SEDKNSDEE 175


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 24  GQAYFSDLIVFREDICHFTILKNTLSNMVVKIYISGIS 137
           G  YF+DLI+F  D   + I+ NT+ + V++ ++ GIS
Sbjct: 743 GIMYFTDLILFFLDTYLWYIIFNTIFS-VLRSFVLGIS 779


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 511 ETTAEKAENDEADTIETSEKVKETSPVKENSP 606
           +T  ++ ENDE DT +TSEK KET    + +P
Sbjct: 64  DTMEDENENDE-DTEQTSEK-KETEETPKENP 93


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 332 NDEEYCGDYDQFDLANEVDTLEQFLKL 412
           N E     YD +D  ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 263 NAKSSGGTVSDPNPRSPLPPQMFNDEEY 346
           NAK S G +       PLPPQ FN  +Y
Sbjct: 394 NAKQSSGKLG------PLPPQSFNSSDY 415


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 649 PVDNEVQEDVA--KQGSPEKEASPDLQ 723
           PV+N V   VA  K G P K ASP +Q
Sbjct: 352 PVNNVVDASVATQKDGIPGKAASPQVQ 378


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 493 RNLPRTETTAEKAENDEADTIETSEKVKETS 585
           +N P  ET  +K +N     +ETS    ETS
Sbjct: 829 KNTPEKETKVDKIDNVSKKDVETSPGSCETS 859


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,775
Number of Sequences: 5004
Number of extensions: 41741
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)