Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30476
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1454 - 27222004-27222296,27222389-27222500                       36   0.033
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41...    33   0.24 
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700...    29   3.8  

>08_02_1454 - 27222004-27222296,27222389-27222500
          Length = 134

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 269 KSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEV-DTLEQF 403
           K  GG    P  R  LPPQ  ++ + CGD+   DL +EV + L+QF
Sbjct: 13  KKKGGVAKKPISRKKLPPQNCSESQDCGDH---DLGDEVEEQLQQF 55


>01_01_0055 -
           415666-415767,416510-416602,416776-416850,416920-417071,
           417147-417267,417567-418289,418408-418489,418575-418681,
           418757-418822,418941-419057,419157-419402
          Length = 627

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 111 VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFCKT 263
           +K++ISG+  NKE    +  V +  +  N++ +  ++  PG+ SD+D   T
Sbjct: 361 MKLFISGVVHNKEDAGAKSYVRVPAEINNLEKDSFELYIPGKGSDRDLADT 411


>02_04_0513 -
           23569212-23569675,23569759-23569801,23569888-23570000,
           23570099-23570158,23570472-23570541,23570887-23570951,
           23571548-23571685,23571764-23573015
          Length = 734

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +1

Query: 511 ETTAEKAENDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQG 690
           +  +E +EN+ A+    S     T+P K   P          A+P+ ++ +   +  K G
Sbjct: 392 QAKSEPSENEAANVSGLSHS--STNPCKGGDPVEEDVDICGNASPILIEKDAHNNPNKCG 449

Query: 691 SPEKEAS 711
           SP   +S
Sbjct: 450 SPSSSSS 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,873,881
Number of Sequences: 37544
Number of extensions: 267190
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)