Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30476
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_39966| Best HMM Match : CRA_rpt (HMM E-Value=8.6)                   36   0.045
SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_57494| Best HMM Match : DUF1213 (HMM E-Value=5.7)                   31   1.3  
SB_42857| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        29   5.2  
SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)            28   6.8  
SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1)             28   6.8  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     28   6.8  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +2

Query: 299 NPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 412
           N  + LPPQ+FN E+YCG YD+   ANE  TLE+FLKL
Sbjct: 58  NDETALPPQIFNGEQYCGGYDELFNANEDGTLEEFLKL 95



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +3

Query: 111 VKIYISGISGNKEVKKRQQRVLMILDS-KNIKYEVIDITEPGRESDK 248
           + +YIS  S N ++KK+Q  + M+L S  +I+ EV+DI+      DK
Sbjct: 6   ITVYISRQSANNQMKKQQNWIDMVLKSVTDIEVEVVDISVDPELKDK 52


>SB_39966| Best HMM Match : CRA_rpt (HMM E-Value=8.6)
          Length = 159

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 505 RTETTAEKAEND-EADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVA 681
           + E T ++AE + EA+T + +EK K+    KE              T    + E QE+  
Sbjct: 51  KQEETEKEAETEKEAETEKEAEKEKKKKTEKEEEKGKQEETGKEAETEKQAETEKQEETE 110

Query: 682 KQGSPEKEASPD 717
           K+G  EKE   +
Sbjct: 111 KEGGTEKEGETE 122


>SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 307 TRVRVTDGATRRFSIVLQKSLSDSLPGSVM-SMTSYFIFFESKIIRTRC*RFFTS 146
           T+ R+T+  T   S  +Q   S   P S++ S  S FIF E  IIR  C R   S
Sbjct: 17  TKSRMTNARTHSTSASIQGDASPLTPASIITSNRSLFIFSEKNIIRRFCKRIVES 71


>SB_57494| Best HMM Match : DUF1213 (HMM E-Value=5.7)
          Length = 159

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 257 QNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFL 406
           + +AKSS  T   P+ ++PL     +++E   DYD+   +     +E++L
Sbjct: 89  EKDAKSSKSTGDPPSDKAPLTATTSDNQETVKDYDRKSTSGSKKPMEKYL 138


>SB_42857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 333 LNICGGSGERGFGSLTVPPEDLALFC-RNLYRTLSLVPLCR 214
           +N  G SGER F     PP    L C + ++R   + PLC+
Sbjct: 93  INKRGPSGERHFRQQQPPPMKACLSCHQQIHRNAPICPLCK 133


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 287 VSDPNPRSPLPPQMFNDEEYCGDYDQF 367
           ++D  P  P+PP +F+D++   D D F
Sbjct: 494 LTDEPPSKPIPPPLFDDDDEDDDIDWF 520


>SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +1

Query: 493 RNLPRTETTAEKAENDEADTIETSEK----VKETSPVKENSPXXXXXXXXXXATPVPVDN 660
           R   R E T   +  D+  T+ T+ +    V E   VK                P P   
Sbjct: 39  RRTRREERTETSSSTDDGTTVRTTRRSRREVVENGDVKHEEEKVSVKEKVIKKEPEPEPE 98

Query: 661 EVQEDVAKQGSPEKEASPD 717
              E  A++  PE EA P+
Sbjct: 99  PEPEVKAEEPEPEVEAEPE 117


>SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1)
          Length = 647

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 334 VKHLRRQW*TRVRVTDGATRRFSIVLQKSLSDSLPGSVMSM 212
           V HLRR +       DG T + S++ +KS   +LP   MS+
Sbjct: 254 VTHLRRPYEVVRATVDGLTLKHSLIPKKSSDSALPEFSMSI 294


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 288 TVPPEDLALFCRNLYRTLSLVPLCR 214
           T   E+  + CRNL++ L L P CR
Sbjct: 349 TEESEEGEVICRNLFKPLKLTPACR 373


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 248 RFLQNNAKSSGGTVSD-PNPRSPLPPQM 328
           ++++NN K + GT  D P P +P PP M
Sbjct: 79  QYVKNNCKKTCGTCGDPPPPATPPPPTM 106


>SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 478 WRNS*RNLPRTETTAEKAENDEADTIETSEKV 573
           W++  R LP  ET  E   +D  DTIE   +V
Sbjct: 675 WKSVARRLPVAETLIESCVHDHRDTIEQCTQV 706


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,597
Number of Sequences: 59808
Number of extensions: 296167
Number of successful extensions: 874
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)