Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30476
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58270.1 68416.m06496 meprin and TRAF homology domain-contain...    30   1.4  
At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    30   1.8  
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    27   9.8  
At3g27025.1 68416.m03381 expressed protein                             27   9.8  

>At3g58270.1 68416.m06496 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 343

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 511 ETTAEKAENDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQG 690
           ETT   ++ DE D  E+++ +KE S VKE+               V    E   D+A + 
Sbjct: 168 ETTKALSKVDENDGAESNDSLKEASSVKESMDVNGFRVLPSQVETVSCIFERHPDIASEF 227

Query: 691 SPEKE 705
            P+ +
Sbjct: 228 GPKNQ 232


>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
           similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 141 NKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFCKTMLNLL 278
           N EV++R++ ++ + D  ++  EVID +      D  FCK   +LL
Sbjct: 576 NTEVRRRKRTMMELADDFSLNNEVIDTSFDRNSDDCCFCKMDGSLL 621


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 508 TETTAEKAENDEADTIETSEKV-KETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAK 684
           T+ TA   +     T ET+  + KET+P KE +P            P   + +  E+V +
Sbjct: 26  TKETAPATKETAPATKETAPTITKETAPTKETAPATKETAPTRTEEPSLTEQD-PENVEE 84

Query: 685 QGSPEKE 705
           + S E+E
Sbjct: 85  EESEEEE 91


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 254 LQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCG 352
           ++ N+ S  G   DPNP        F+++E+CG
Sbjct: 49  IRTNSFSFYGHTHDPNPSKVEQDLRFDEDEFCG 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,782
Number of Sequences: 28952
Number of extensions: 217050
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)