Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30475
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.5  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   6.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.2  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   8.2  

>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 79  RYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 180
           RY  + G IV+   ++PR +K +GD   +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 68   LVSRGMQPNMV*LS*VLILRHVELRLMEMIHHG 166
            L+S  +QPN++ L+   +L+H+  R  + + HG
Sbjct: 1285 LISSALQPNLLELTISHMLQHIGQRAFQTLIHG 1317


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 182 ALTPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVMKFCSLQVRP 30
           A TP    +SS    TP   +S   ++TP S+A L+ P +  +  +  V+P
Sbjct: 669 ASTPAVTAKSSFHYATPTSGLSNFNSVTPSSSASLYPPLIPSEARTPSVQP 719


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 58  ITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWD--FGVSAGFYLDATNEPWNNNYR 231
           I+ SGF++Y   +      PD  P  V  +  +  WD  F VS G +   +     +  R
Sbjct: 308 ISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDGQFKQVSFVNNISTIR 367

Query: 232 MGSYLN 249
            G+++N
Sbjct: 368 GGTHVN 373


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 103 IVVGPDTSPRGVKIDGDDSSWDFGVSA 183
           +++    S R + I G+D+ W  G+SA
Sbjct: 115 VILATGASARRLHITGEDTYWQAGISA 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,244
Number of Sequences: 5004
Number of extensions: 65290
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)