Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30475
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768...   111   6e-25
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    29   3.1  
At3g42610.1 68416.m04423 hypothetical protein                          28   7.1  
At1g48390.1 68414.m05405 syntaxin-related family protein contain...    28   7.1  
At3g20740.1 68416.m02624 fertilization-independent endosperm pro...    27   9.4  

>At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768
           Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam
           profile: PF00756 putative esterase
          Length = 284

 Score =  111 bits (266), Expect = 6e-25
 Identities = 48/81 (59%), Positives = 64/81 (79%)
 Frame = +1

Query: 4   KLPLLYYLSGLTCSEQNFITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSA 183
           K P+LY+LSGLTC+++NFI KSG QR A+ HG+ +V PDTSPRG+ ++G+  S+DFGV A
Sbjct: 47  KSPVLYWLSGLTCTDENFIIKSGAQRAASTHGIALVAPDTSPRGLNVEGEADSYDFGVGA 106

Query: 184 GFYLDATNEPWNNNYRMGSYL 246
           GFYL+AT E W  N+RM  Y+
Sbjct: 107 GFYLNATQEKW-KNWRMYDYV 126



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 34/69 (49%), Positives = 48/69 (69%)
 Frame = +2

Query: 506 EYNGPPLTLLLDQGSGDKFYLEKQLLPENLVEACRSVGVPVILQLRDGYDHSYYYISTYI 685
           +YN    T+L+DQG  D+FY + QLLP    EAC+ V  P++L+L  GYDHSYY+I+T+I
Sbjct: 213 KYNNLSATILIDQGENDQFYPD-QLLPSKFEEACKKVNAPLLLRLHPGYDHSYYFIATFI 271

Query: 686 GEHFDFHAK 712
            +H   HA+
Sbjct: 272 EDHISHHAQ 280



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/60 (56%), Positives = 42/60 (70%)
 Frame = +3

Query: 342 ALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFSGYLGEDKSKWAEWDATELVKNTMDL 521
           AL   LRN  +YKSVSAFAPI NP  C WG KAF+ YLG++K+ W E+DAT L+    +L
Sbjct: 158 ALTIYLRNLDKYKSVSAFAPITNPINCAWGQKAFTNYLGDNKAAWEEYDATCLISKYNNL 217


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 176 TPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVM 57
           +PK  DES P +     + S P    P     LWKP++ +
Sbjct: 182 SPKDSDESEPEVEKVGDKKSDPKEEVPVEWISLWKPNVTI 221


>At3g42610.1 68416.m04423 hypothetical protein
          Length = 202

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 518 PPLTLLLDQGSGDKFYLEKQLLPENLVEACRSVGVPVILQLRDGYD---HSYYYISTYIG 688
           P  TLLL++G+    YLE   L  N V     + +   +   D Y    H  +  +T  G
Sbjct: 70  PYFTLLLERGASPALYLEGVRLACNFVTVAHGITMLGSISATDAYACFLHGLFLTATGNG 129

Query: 689 EHFD 700
             F+
Sbjct: 130 REFE 133


>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
           At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
           thaliana]
          Length = 413

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 145 DGDDSSWDFGVSAGFYLDATN 207
           DGD   WDF V   +Y D TN
Sbjct: 235 DGDVYGWDFNVPFDYYGDVTN 255


>At3g20740.1 68416.m02624 fertilization-independent endosperm
           protein (FIE) contains 6 WD-40 repeats (PF00400);
           identical to fertilization-independent endosperm protein
           (GI:4567095) [Arabidopsis thaliana]
          Length = 369

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 179 LTPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVMK 54
           +T  SH++S   I      V G T +  C    +W+ D++ K
Sbjct: 328 ITKLSHNQSKSVIRQTAMSVDGSTILACCEDGTIWRWDVITK 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,277
Number of Sequences: 28952
Number of extensions: 340229
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)