Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30473X
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    35   0.007
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   1.4  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.9  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   7.5  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   10.0 
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    25   10.0 

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 498 IINSRNLNTSFFDPAGGGDP 557
           + + RNLNTSF+ P GGGDP
Sbjct: 216 LFSDRNLNTSFYAPEGGGDP 235


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 236 INTRRKFASATSMFSVPSEFKIA-DLLKKQSTNFL 337
           INT  +FASA+++FS+  ++ +  D    Q T +L
Sbjct: 115 INTYLEFASASNLFSIIEQYDVVLDCTDNQYTRYL 149


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 480 SARDNVHLTETQKEKAKQYTSECVKESGVSTEVINAAK 367
           +A  N H++E  KE+A++Y  E   ES  +T      K
Sbjct: 13  AALSNPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 474 RDNVHLTETQKEKAKQYTSECVKES 400
           +D   +TE  KE+ K+ TS   KES
Sbjct: 38  KDTSKITENAKEEVKRDTSSLAKES 62


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 302 ADLLKKQSTNFLKA-LSSEYCPVFAAFITSVLTPDSLT 412
           A L   Q TN +    SS  CP+F    T+ +TP + T
Sbjct: 37  AVLESSQDTNSVGGEASSTACPLFTTIYTNGITPGTTT 74


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 271 GCCASKLPPGVNKSEAQSVLEQCKDKTGQ 185
           GC     PPG+N +E+   ++  + + GQ
Sbjct: 22  GCIVEGCPPGMNLTESDVQVQLTRRRPGQ 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,171
Number of Sequences: 5004
Number of extensions: 41117
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)