Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30473X
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           30   1.1  
08_02_0082 + 12059692-12060209,12060484-12060973                       28   5.8  
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662...    28   5.8  
08_02_0077 - 11979497-11979654,11980012-11982178                       27   7.7  

>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = -1

Query: 480 SARDNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSA 301
           S  D ++L E  +    +     V+       + NAAK   Y E K   K ++C F K  
Sbjct: 44  SGEDKINLEEMLRHAEPEVPMGSVRGLNNFEALQNAAKEVMYDESKGCNKKIVCEFGKVT 103

Query: 300 ILNSDGT 280
              S GT
Sbjct: 104 KKPSKGT 110


>08_02_0082 + 12059692-12060209,12060484-12060973
          Length = 335

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 138 PL**HWKISKALSAASCPVLSLHCSSTLWASDLLTPG 248
           PL  H     A+SAA C  +   C    W S++  PG
Sbjct: 33  PLTEHDDAISAMSAAHCNNMQFRCYRGFWISEMWAPG 69


>04_04_1225 -
           31865556-31865590,31865687-31865734,31866179-31866262,
           31866336-31866395,31866589-31866642,31866747-31867710
          Length = 414

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 474 RDNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKF 328
           RD+V+L +T   +A  YTS  ++ + V  +++     G+Y   K  KKF
Sbjct: 103 RDSVNLVKTSLSQASIYTSAPLQGNSVKDDIV-----GKYFVGKMSKKF 146


>08_02_0077 - 11979497-11979654,11980012-11982178
          Length = 774

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 334 EIRALLFQQIRNLEL-RWYTEHGCCASKLPPGVNKSEAQSVLEQCK 200
           ++  L FQ++  L L  W   H   A K PP  + +  + +LEQ K
Sbjct: 491 QVAELKFQEMAALALFNWGNVHMASARKRPPLSDDASMECILEQVK 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,610
Number of Sequences: 37544
Number of extensions: 253675
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)