Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30473X
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_40634| Best HMM Match : fn3 (HMM E-Value=0.058)                     28   5.9  
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)                27   7.9  
SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)                    27   7.9  

>SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = -1

Query: 471 DNVHLTETQKEKAKQYTS--ECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI 298
           D+  + + +K  AK + S  E V E+    +V      G Y  D+   K    FFNKS +
Sbjct: 354 DSDFVLDVKKTAAKFHLSWLEQVCENKFGEDVYLNPSIGTYLNDETGAKLKSLFFNKSQL 413

Query: 297 LNSDGTLNMDVALANFLLVLINLKPKAY*NSARIRPGKTQ 178
            +    ++  V  A+ ++++      A     R + GKT+
Sbjct: 414 CDFRFRVDGQVVFAHKVVLMARCDVMAAMLGGRFKEGKTE 453


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -1

Query: 468 NVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSE 349
           N HL     E+   ++ +C+K + + ++ ++  KTG+  E
Sbjct: 253 NAHLVHADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPE 292


>SB_40634| Best HMM Match : fn3 (HMM E-Value=0.058)
          Length = 293

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 326 TNFLKALSSEYCPVFAAFITSVLTPDSLTH--SEVYCLAFSF*VSVRWTLSRAEFGTRQY 499
           +N LK+  +   P  +A         ++TH  S  + LA  F V++ W   R ++GT   
Sbjct: 56  SNTLKSRHTTLAPSLSAVPVEETLCRNITHRLSNTHSLATKFNVTITWVQPRFQYGTITS 115

Query: 500 Y 502
           Y
Sbjct: 116 Y 116


>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 326  TNFLKALSSEYCPVFAAFITSVLTPDSLTH--SEVYCLAFSF*VSVRWTLSRAEFGTRQY 499
            +N LK+  +   P  +A         ++TH  S  + LA  F V++ W   R ++GT   
Sbjct: 881  SNTLKSRHTTLAPSLSAVPVEETLCRNITHRLSNTHSLATKFNVTITWVQPRFQYGTITS 940

Query: 500  Y 502
            Y
Sbjct: 941  Y 941


>SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)
          Length = 352

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 462 HLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKA 340
           H  +T+K+   + + E  K S V T+  NAAKTG   E  A
Sbjct: 190 HSPKTRKKFEARLSEEEGKVSHVRTQYENAAKTGMLDEATA 230


>SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)
          Length = 1395

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 417 ECVKESGVSTEVINAAKTGQYSEDKAFKKFV-LCFFNKSAILNSDGTLNMDVALAN 253
           + VK SG++  V   +K G+YS  +AF   + L     S +L +D  L M   L N
Sbjct: 459 DAVKRSGIAEIVKTVSKPGKYSRREAFNVAMNLVTDPNSIVLLTDLHLEMTSLLLN 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,711,512
Number of Sequences: 59808
Number of extensions: 289810
Number of successful extensions: 756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)