Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30473X
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    32   0.30 
At1g79360.1 68414.m09248 transporter-related low similarity to S...    30   1.2  
At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SD...    29   1.6  
At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SD...    29   1.6  
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr...    29   2.8  
At1g69310.2 68414.m07949 WRKY family transcription factor contai...    28   4.9  
At1g69310.1 68414.m07948 WRKY family transcription factor contai...    28   4.9  

>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 156 KISKALSAASCPVLSLHCSSTLWASDLLTP--GGSLLAQHPCSVYHLSSRLRIC 311
           K  + L  + C  L +    T     LL     G+ +A+ PCS++HLSS  R+C
Sbjct: 795 KSLQELKLSRCSKLKIFPDVTAKMESLLVLLLDGTSIAELPCSIFHLSSLRRLC 848


>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 128 CLGPFVVALEDLEGFIGCVLPGLILA 205
           C G FV  L +   F+GC++ GL+L+
Sbjct: 107 CAGSFVKGLPESSFFVGCLIGGLVLS 132


>At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SDR)
           family protein similar to tropinone reductase-I
           GI:424160 from [Datura stramonium]
          Length = 262

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 459 LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 322
           L +  K  A ++  + ++ + V+  VIN   +  Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211


>At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SDR)
           family protein similar to tropinone reductase-I
           GI:424160 from [Datura stramonium]
          Length = 307

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 459 LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 322
           L +  K  A ++  + ++ + V+  VIN   +  Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211


>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 492 LVPNSARDNVHLTETQKEKAKQYTSECVKESGVSTEVI--NAAKTGQYSEDKAFKK 331
           L P+S  D VH T++   K K   S   KES  S+ +   N+  +G+    K  K+
Sbjct: 98  LDPDSVSDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGENGGSKGGKR 153


>At1g69310.2 68414.m07949 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 287

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 486 PNSARDNVHLTETQKEKAKQYTSECVKESGVSTEVI----NAAKTGQYSEDKA 340
           P+S R +  LT+T   K    TS C   + VS  V     N + T   SED A
Sbjct: 51  PHSLRFDSDLTQTTGVKPTTVTSSCSSSAAVSVAVTSTNNNPSATSSSSEDPA 103


>At1g69310.1 68414.m07948 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 287

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 486 PNSARDNVHLTETQKEKAKQYTSECVKESGVSTEVI----NAAKTGQYSEDKA 340
           P+S R +  LT+T   K    TS C   + VS  V     N + T   SED A
Sbjct: 51  PHSLRFDSDLTQTTGVKPTTVTSSCSSSAAVSVAVTSTNNNPSATSSSSEDPA 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,095,035
Number of Sequences: 28952
Number of extensions: 212086
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)