Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30472
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0145 + 18588201-18588242,18588925-18589044,18589201-185894...    31   0.67 
03_06_0691 + 35576319-35576702,35576803-35576885,35576972-355770...    30   1.6  
01_05_0233 - 19641309-19641871,19650741-19650892,19651193-19651308     30   2.1  
08_02_0448 + 17239987-17240489,17240633-17241042,17241183-172414...    29   3.6  
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310...    28   8.3  
08_02_0407 + 16818621-16819403                                         28   8.3  

>01_05_0145 +
           18588201-18588242,18588925-18589044,18589201-18589457,
           18589980-18590048,18590091-18590115
          Length = 170

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 442 ILYDSHFSLXLQIEKKNKLFHKGSHVVYSKATSWPSIF 555
           ++ D H ++ + IE    + HKG+H V S +  W  +F
Sbjct: 52  VVEDLHLAIEIFIESVFDIVHKGAHYVLSPSEVWKKLF 89


>03_06_0691 +
           35576319-35576702,35576803-35576885,35576972-35577012,
           35577974-35578018,35578217-35578371,35579116-35579265,
           35579386-35579481,35579738-35579854,35579969-35580088,
           35580170-35580262,35580351-35580467,35580815-35580931,
           35581089-35581151,35581238-35581399
          Length = 580

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 350 RCSRRRGRIVLCRVEILGIVDETDDVCAV 436
           RCSRRRG +V C+     +V   DD  +V
Sbjct: 41  RCSRRRGLVVRCQSGAAAVVLNKDDAASV 69


>01_05_0233 - 19641309-19641871,19650741-19650892,19651193-19651308
          Length = 276

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 184 ARYSGAPDESLDGFIDAVEAYKECANVS-ETIALRGLSMLLTHEAATWWQGVKTTMNKWD 8
           A +S + +E +     AV  Y +   VS + + LR     L  +A  W+   + T+N WD
Sbjct: 74  APWSKSGEEKIPSATGAVPGYLQHLRVSPDAVRLRLFPFSLLGKAKQWFYANRATVNTWD 133


>08_02_0448 +
           17239987-17240489,17240633-17241042,17241183-17241406,
           17241590-17242018,17244726-17244809
          Length = 549

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 154 LDGFIDAVEAYKECANVSETIALRGLSMLLTHEAATWWQGVKTTMNKWD 8
           L  F++    Y      S+ + LR  S  L  +A  W+   + T+N WD
Sbjct: 33  LQQFLEIYSTYTVKGVSSDAVRLRLFSFSLLGKAKQWFYANRMTVNTWD 81


>09_02_0027 +
           3105963-3106276,3106298-3107027,3107069-3107134,
           3107192-3107324,3108985-3109088
          Length = 448

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 178 YSGAPDESLDGFIDAVEAYKECANVSETIALRGLSMLLTHEAATWWQGVKTTMNKWD 8
           + G P+E  +  +     Y      S+T+ LR     L  +A  W+   + T+N WD
Sbjct: 92  FCGMPNEDANAHL---HTYTMKGVSSDTVRLRLFPFSLLGKAKQWFYANRATINTWD 145


>08_02_0407 + 16818621-16819403
          Length = 260

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 353 IGKHFRQRHGRHD--VYVATQPRVNLLSLRYFYIQSQPIAAVIAPARSTCTRK 201
           IG   + R GR D  V V   PR+ +L +   +++  P +AV+   R   T+K
Sbjct: 26  IGLSLKARRGRRDIDVVVLMIPRLEILDVASRFLRRIPQSAVLFGLRGAKTKK 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,569,532
Number of Sequences: 37544
Number of extensions: 294151
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)