Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30472
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_27902| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)            28   8.5  

>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 588 NKTSNNRSRSLMTMTNFKTNTLINLTISARAHTSRNNNN 704
           NKTS+N + S    T+   NT  N   S   +TS NNN+
Sbjct: 126 NKTSDNNNTSDNNNTSDNNNTSDNNNTSDNNNTSDNNNS 164



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 588 NKTSNNRSRSLMTMTNFKTNTLINLTISARAHTSRNNN 701
           NKTS+N   S    T+   NT  N   S   +TS NNN
Sbjct: 120 NKTSDNNKTSDNNNTSDNNNTSDNNNTSDNNNTSDNNN 157


>SB_27902| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
          Length = 493

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 320 GDHVVDGNVSRCSRRRG---RIVLCRVEILGI-VDETDDVCAVLSFCTIVTSHXFCKLKK 487
           G+H+ D   SR +  +    RIV    E +GI ++    +C VL F  +  +   C +K+
Sbjct: 217 GEHIGDATASRANNTKDINRRIVYASSE-MGIGMEGVAKLCEVLDFEVLSKTCHACDIKR 275

Query: 488 KTNSFTKVHTW 520
            T    +   W
Sbjct: 276 STLQSDEFEVW 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,649,122
Number of Sequences: 59808
Number of extensions: 362873
Number of successful extensions: 990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)