Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30471
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VED7 Cluster: Putative uncharacterized protein; n=4; ...    38   0.24 
UniRef50_Q9ZW94 Cluster: F5A8.4 protein; n=1; Arabidopsis thalia...    34   3.0  
UniRef50_UPI00015B4E13 Cluster: PREDICTED: similar to conserved ...    34   3.9  
UniRef50_Q9VVV9 Cluster: Protein naked cuticle; n=2; Drosophila ...    33   5.2  
UniRef50_Q0JI30 Cluster: Os01g0828100 protein; n=4; Oryza sativa...    33   6.8  
UniRef50_A0G230 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_A4VED7 Cluster: Putative uncharacterized protein; n=4;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1846

 Score = 37.9 bits (84), Expect = 0.24
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 645 DNANAPFHPPNTCLSLSPHKYQQTTVIIRNKNNTIVNCHNMDATVSWRCV 496
           D+    F P  T L +S H      + +RNK N I+  +N  A ++W C+
Sbjct: 266 DSYRVKFSPDETHLCISNHVKGVQIIDVRNKKNMIIRANNNPAFITWDCI 315


>UniRef50_Q9ZW94 Cluster: F5A8.4 protein; n=1; Arabidopsis
           thaliana|Rep: F5A8.4 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 5138

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = -3

Query: 173 PVATTLNATVER-NSPLR----GSTTLDPESFSVPARYTSQTLVKWC 48
           PVA  L  T E  NS LR     STT +  +FS P+R++ + L+KWC
Sbjct: 424 PVAEKLIETFETINSALRPQFSSSTTENSATFSSPSRFSLRDLLKWC 470


>UniRef50_UPI00015B4E13 Cluster: PREDICTED: similar to conserved
           hypothetical protein; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to conserved hypothetical protein -
           Nasonia vitripennis
          Length = 826

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 631 TISST*YLSITLAS*IPTNNCHNSK*KQYNRKLSQHGCN 515
           TI S  YL+  L + IP NN +N+   ++NR L   GCN
Sbjct: 276 TIMSMMYLNYALYTNIPMNNIYNTLNAEFNRYLYYAGCN 314


>UniRef50_Q9VVV9 Cluster: Protein naked cuticle; n=2; Drosophila
           melanogaster|Rep: Protein naked cuticle - Drosophila
           melanogaster (Fruit fly)
          Length = 928

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 224 QRPSRHQRTSLEPGSMLPVATTLNATVERNSPLRGS-TTLDPESFSVPA 81
           Q+P + QR     GS +P   T ++ V + SPL  S  T +P + S+PA
Sbjct: 589 QQPQQQQRQRCNTGSKIPTLITNHSPVAQQSPLSCSPPTAEPTTPSIPA 637


>UniRef50_Q0JI30 Cluster: Os01g0828100 protein; n=4; Oryza
           sativa|Rep: Os01g0828100 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 373

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -3

Query: 206 QRTSLEPGSMLPVATTLNATVERNSPLRGSTTLDPESFSVPARYTSQTLVKWCTHRCRRV 27
           Q   L+P S+ P     +      SPL    T DPE+ + P    +Q  +++C H C   
Sbjct: 87  QMDLLDPASITPAVDGAHGVFHLASPLTLHPTQDPEATNSPFT-IAQLQLQYCLHTCTNA 145

Query: 26  AAAG 15
             +G
Sbjct: 146 VLSG 149


>UniRef50_A0G230 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia phymatum STM815|Rep: Putative
           uncharacterized protein - Burkholderia phymatum STM815
          Length = 353

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 176 LPVATTLNATVERNSPLRGSTTLDPESF--SVPARYTSQTLVKWCTHRCRRVAAAGTRC 6
           +P A  +   V  NSPL G   +D E    +V A  T    V+   H C R  +AGT C
Sbjct: 259 MPEARVVGMCVRDNSPLDGLPRIDMEVALRTVQAFGTRDDQVRLLIHVCLRAVSAGTGC 317


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,462,664
Number of Sequences: 1657284
Number of extensions: 12382967
Number of successful extensions: 32758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32753
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)