Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30471
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    33   0.22 
05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261...    29   3.6  
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086...    28   6.3  
08_01_0833 + 8113327-8113449,8113797-8114020,8115361-8115437,811...    28   8.3  

>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -3

Query: 206 QRTSLEPGSMLPVATTLNATVERNSPLRGSTTLDPESFSVPARYTSQTLVKWCTHRCRRV 27
           Q   L+P S+ P     +      SPL    T DPE+ + P    +Q  +++C H C   
Sbjct: 87  QMDLLDPASITPAVDGAHGVFHLASPLTLHPTQDPEATNSPFT-IAQLQLQYCLHTCTNA 145

Query: 26  AAAG 15
             +G
Sbjct: 146 VLSG 149


>05_01_0333 -
           2614123-2614202,2614466-2614553,2614644-2614721,
           2614795-2614887,2614982-2615101,2615685-2615726,
           2615822-2616091,2617188-2617339,2617771-2618233
          Length = 461

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -3

Query: 200 TSLEPGSMLPVATTLNATVERNSPLRGSTTLDPESFSVPARYTSQ 66
           TS +P S +PVA   +A  E ++P  GSTT    S +   R  SQ
Sbjct: 21  TSRKPDSGVPVAADADAAKEGDAPGSGSTTRVTRSRAARCRPGSQ 65


>04_04_1513 -
           34107700-34107765,34108475-34108551,34108640-34108688,
           34109144-34109218,34109447-34109554,34109728-34109835,
           34110708-34111256
          Length = 343

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = -2

Query: 246 ELTNRKIATTVTTPKDFARTGFNAASCYYFKCYGRAKLAA-TRFYYIRP*VVQCSGTLYE 70
           E++  K A  +    D AR   +AAS       G  KL+     +YI    V+C GTLYE
Sbjct: 250 EISLCKRAVFLEKDDDMARAHLSAASA------GDTKLSDDVEEHYIC--FVECDGTLYE 301

Query: 69  SD---PGQVVHSP 40
            D   PG + H P
Sbjct: 302 LDGMKPGPINHGP 314


>08_01_0833 +
           8113327-8113449,8113797-8114020,8115361-8115437,
           8115516-8115600,8115695-8115812,8116516-8116887
          Length = 332

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 188 VRAKSFGVVTVVAIFLLVSSFCNNLSLSRIYLYLTLC 298
           +R KSFG +  V + L++ +  NN +L    L  TLC
Sbjct: 189 LRLKSFGTIMGVKLVLMLENDPNNATLLANKLLATLC 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,740
Number of Sequences: 37544
Number of extensions: 339441
Number of successful extensions: 835
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)