Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30471
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2) 29 3.7
SB_52244| Best HMM Match : RVT_1 (HMM E-Value=9.5e-20) 29 3.7
SB_49278| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_46147| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_12149| Best HMM Match : PLAC8 (HMM E-Value=7.5) 28 8.5
>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 543 IVNCHNMDATVSWRCVVQRCPVSNAH 466
+ NCHN D V+ C C V+N H
Sbjct: 312 VTNCHNTDCHVTNSCHTTDCHVTNCH 337
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 558 NKNNTIVNCHNMDATVSWRCVVQRCPVSNAH 466
N + + NCH D V+ C C V+N H
Sbjct: 286 NTDCHVTNCHTTDCHVTNSCHTTDCHVTNCH 316
>SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 750
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -3
Query: 224 QRPSRHQRTSLEPGSMLP-VATTLNA-TVERNSPLRGSTTLDPESFSVPARYTSQTLV 57
Q+P++ + P S+ VA + + T+ R +P S LDP+ F++ +R TSQ LV
Sbjct: 362 QKPAKSVEKDIRPVSLTSQVAKIMESFTLSRITPSLTSK-LDPKQFALASRSTSQALV 418
>SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 712
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -3
Query: 224 QRPSRHQRTSLEPGSMLP-VATTLNA-TVERNSPLRGSTTLDPESFSVPARYTSQTLV 57
Q+P++ + P S+ VA + + T+ R +P S LDP+ F++ R TSQ LV
Sbjct: 358 QKPAKSVEKDIRPVSLTSQVAKIMESFTLSRITPSLTSK-LDPKQFALAGRSTSQALV 414
>SB_52244| Best HMM Match : RVT_1 (HMM E-Value=9.5e-20)
Length = 523
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -3
Query: 224 QRPSRHQRTSLEPGSMLP-VATTLNA-TVERNSPLRGSTTLDPESFSVPARYTSQTLV 57
Q+P++ + P S+ VA + + T+ R +P S LDP+ F++ R TSQ LV
Sbjct: 113 QKPAKSVEKDIRPVSLTSQVAKIMESFTLSRITPSLTSK-LDPKQFALAGRSTSQALV 169
>SB_49278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -3
Query: 218 PSRHQRTSLEPGSMLPVATTLNATVE-RNSPLRGSTTL-DPESFSVPARYT 72
P+RH S P P TLN TV+ +P+ +L P + P YT
Sbjct: 473 PTRHSPVSTSPSRRSPSGITLNTTVQIIQAPVTNQQSLSSPVNNQAPMAYT 523
>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -3
Query: 224 QRPSRHQRTSLEPGSMLP-VATTLNA-TVERNSPLRGSTTLDPESFSVPARYTSQTLV 57
Q+P++ + P S+ VA + + T+ R +P S LDP+ F++ R TSQ LV
Sbjct: 754 QKPAKSVEKDIRPVSLTSQVAKIMESFTLSRITPSLTSK-LDPKQFALAGRSTSQALV 810
>SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -3
Query: 224 QRPSRHQRTSLEPGSMLP-VATTLNA-TVERNSPLRGSTTLDPESFSVPARYTSQTLV 57
Q+P++ + P S+ VA + + T+ R +P S LDP+ F++ R TSQ LV
Sbjct: 335 QKPAKSVEKDIRPVSLTSQVAKIMESFTLSRITPSLTSK-LDPKQFALAGRSTSQALV 391
>SB_46147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 630 PFHPPNTCLSLSP 592
PFH P++CLSLSP
Sbjct: 85 PFHDPSSCLSLSP 97
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 221 RPSRHQRTSLEPGSMLPVATTLNATVERNSPLRGSTTLDP 102
+P+++QRT+LEP +P T RN+ LR + + P
Sbjct: 1101 KPTKYQRTALEPIQEVPTP----MTTPRNTRLRKDSVMSP 1136
>SB_12149| Best HMM Match : PLAC8 (HMM E-Value=7.5)
Length = 147
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 451 SIIIRMSIRNGAALHDTTPTDGCIHVVTVYDCIVFISNYDSCLLVFMRRE 600
++++ + G L TTPTD C+H V + C+++ C + +R E
Sbjct: 96 AMLLPTTTPTGYLLPSTTPTDACMHAV-LCTCVLWKVGRSLCDTMNIRLE 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,855,867
Number of Sequences: 59808
Number of extensions: 401382
Number of successful extensions: 1060
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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