Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30471
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z49128-7|CAA88956.2|  300|Caenorhabditis elegans Hypothetical pr...    28   5.7  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    28   5.7  
AF067948-4|AAO25983.1|  756|Caenorhabditis elegans Egl-27 relate...    27   9.9  
AF067948-3|AAO25984.1|  870|Caenorhabditis elegans Egl-27 relate...    27   9.9  
AF067948-2|AAD34654.1|  870|Caenorhabditis elegans Egl-27 relate...    27   9.9  
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate...    27   9.9  

>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical protein
            K08E7.9 protein.
          Length = 1321

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 156  KCYGRAKLAATRFYYI-RP*VVQCSGTLYESDPGQVVHSPLPASCGR 19
            K YG+      RF Y  RP +    G  +  +PGQ +    P+ CG+
Sbjct: 1072 KLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGK 1118


>Z49128-7|CAA88956.2|  300|Caenorhabditis elegans Hypothetical
           protein M03C11.6 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 352 ITYKHVKTIDFKFSNR*WRHVGTRFNLRNCFVISII-IRMSI 474
           IT   + +IDF  S+R  RHV TRF ++N     I+ I+ SI
Sbjct: 61  ITENQIFSIDFIDSSRFERHVITRFEVKNRLETDILSIQASI 102


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
            protein.
          Length = 1321

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 156  KCYGRAKLAATRFYYI-RP*VVQCSGTLYESDPGQVVHSPLPASCGR 19
            K YG+      RF Y  RP +    G  +  +PGQ +    P+ CG+
Sbjct: 1072 KLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGK 1118


>AF067948-4|AAO25983.1|  756|Caenorhabditis elegans Egl-27 related
           protein 1, isoform c protein.
          Length = 756

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 630 PFHPPNTCLSLSPHKYQQTTVIIRNKNNTIVNCHNMDATVSW 505
           PF+ P    S+ P+   QTT++  N +N   NC  +DA ++W
Sbjct: 561 PFNKP-IAASILPYNTSQTTLM--NNDNPCENCGTLDA-LNW 598


>AF067948-3|AAO25984.1|  870|Caenorhabditis elegans Egl-27 related
           protein 1, isoform d protein.
          Length = 870

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 630 PFHPPNTCLSLSPHKYQQTTVIIRNKNNTIVNCHNMDATVSW 505
           PF+ P    S+ P+   QTT++  N +N   NC  +DA ++W
Sbjct: 561 PFNKP-IAASILPYNTSQTTLM--NNDNPCENCGTLDA-LNW 598


>AF067948-2|AAD34654.1|  870|Caenorhabditis elegans Egl-27 related
           protein 1, isoform b protein.
          Length = 870

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 630 PFHPPNTCLSLSPHKYQQTTVIIRNKNNTIVNCHNMDATVSW 505
           PF+ P    S+ P+   QTT++  N +N   NC  +DA ++W
Sbjct: 561 PFNKP-IAASILPYNTSQTTLM--NNDNPCENCGTLDA-LNW 598


>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
           protein 1, isoform a protein.
          Length = 1022

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 630 PFHPPNTCLSLSPHKYQQTTVIIRNKNNTIVNCHNMDATVSW 505
           PF+ P    S+ P+   QTT++  N +N   NC  +DA ++W
Sbjct: 561 PFNKP-IAASILPYNTSQTTLM--NNDNPCENCGTLDA-LNW 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,927
Number of Sequences: 27780
Number of extensions: 303032
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)