Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30471
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    34   0.080
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc...    33   0.18 
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    31   0.74 
At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR ...    29   4.0  
At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase fa...    28   5.2  
At2g15980.1 68415.m01829 pentatricopeptide (PPR) repeat-containi...    28   6.9  

>At1g67120.1 68414.m07636 midasin-related similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q12019)
           [Saccharomyces cerevisiae]; similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
           sapiens]; contains Prosite PS00017: ATP/GTP-binding site
           motif A (P-loop)
          Length = 5336

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = -3

Query: 173 PVATTLNATVER-NSPLR----GSTTLDPESFSVPARYTSQTLVKWC 48
           PVA  L  T E  NS LR     STT +  +FS P+R++ + L+KWC
Sbjct: 518 PVAEKLIETFETINSALRPQFSSSTTENSATFSSPSRFSLRDLLKWC 564


>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 387

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 302 TNIK*DINKFLTMTDYYRKNSLIGK*QRPSRHQRTSLEPGSMLPVATTLNATV-ERNSPL 126
           TN   D     +  D YR+    G   +  RH+  S  P    P++  L + +  + SP+
Sbjct: 298 TNSSSDTESSSSSDDGYRRRLRDGSRSQSPRHRSRSQSPRKRQPISQDLKSRLGPQRSPI 357

Query: 125 RGSTTLDPESFS 90
           RG  T   ES S
Sbjct: 358 RGGRTSPAESLS 369


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 260 DYYRKNSLIGK*QRPSRHQRTSLEPGSMLPVATTLNATV-ERNSPLRGSTTLDPESFS 90
           D YR+    G   +  RH+  S  P    P++  L + +  + SP+RG  T   ES S
Sbjct: 495 DGYRRRLRDGSRSQSPRHRSRSQSPRKRQPISQDLKSRLGPQRSPIRGGRTSPAESLS 552


>At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 885

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 543 IVNCHNMDATVSWRCVVQR 487
           I+ C+ ++ T+ WRC +QR
Sbjct: 696 ILGCNILEITIDWRCTIQR 714


>At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1)  from {Mus musculus} SP|P98200, {Bos
            taurus} SP|Q29449, {Homo sapiens} SP|O43520; contains
            InterPro accession IPR005834: Haloacid dehalogenase-like
            hydrolase
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 403  WRHV-GTRFN-LRNCFVISIIIRMSIRNGAALHDTTPTDGCIHVVTVYDCIVFISNYDSC 576
            WR + G  FN   +  +I  + + S+++ A  HD       I   T+Y CIV++ N    
Sbjct: 1007 WRRILGWMFNGFYSAVIIFFLCKSSLQSQAFNHDGKTPGREILGGTMYTCIVWVVNLQMA 1066

Query: 577  LLV 585
            L +
Sbjct: 1067 LAI 1069


>At2g15980.1 68415.m01829 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 498

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 692 SEPPTDPARPASSDSMTTRTHH 627
           S PP+ P+ P  SD+++  THH
Sbjct: 31  SSPPSPPSDPLISDAVSILTHH 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,282
Number of Sequences: 28952
Number of extensions: 266727
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)