Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30470
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 135 6e-33
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 135 6e-33
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 135 6e-33
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 36 0.007
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 29 1.0
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 1.0
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 29 1.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 1.8
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 7.1
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 135 bits (327), Expect = 6e-33
Identities = 56/73 (76%), Positives = 67/73 (91%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 687
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++T
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
Query: 688 VKRGTSAGRKVGL 726
V R ++ G+KVGL
Sbjct: 224 VPRQSAPGQKVGL 236
Score = 132 bits (318), Expect = 7e-32
Identities = 58/82 (70%), Positives = 68/82 (82%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVKLPSGAKKVLPSSNRG 508
+TRVKLPSGAKKV+PSS RG
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARG 163
Score = 116 bits (280), Expect = 3e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 135 bits (327), Expect = 6e-33
Identities = 56/73 (76%), Positives = 67/73 (91%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 687
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++T
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
Query: 688 VKRGTSAGRKVGL 726
V R ++ G+KVGL
Sbjct: 224 VPRQSAPGQKVGL 236
Score = 132 bits (318), Expect = 7e-32
Identities = 58/82 (70%), Positives = 68/82 (82%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVKLPSGAKKVLPSSNRG 508
+TRVKLPSGAKKV+PSS RG
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARG 163
Score = 116 bits (280), Expect = 3e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 135 bits (327), Expect = 6e-33
Identities = 56/73 (76%), Positives = 67/73 (91%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 687
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++T
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
Query: 688 VKRGTSAGRKVGL 726
V R ++ G+KVGL
Sbjct: 224 VPRQSAPGQKVGL 236
Score = 132 bits (318), Expect = 7e-32
Identities = 58/82 (70%), Positives = 68/82 (82%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVKLPSGAKKVLPSSNRG 508
+TRVKLPSGAKKV+PSS RG
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARG 163
Score = 116 bits (280), Expect = 3e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 604 PYVRGVAMNPVEHPHGGGNHQHIG 675
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.9 bits (79), Expect = 0.007
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -3
Query: 549 RFVNTSTSSNNTDQ-PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 409
RF+N +T+S++T Q PLLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -3
Query: 561 SFQNRFVNTSTSSNNTDQPLLLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 394
SF+ + NT+T N + + LDGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 393 RRPLSPIFS 367
R+ PI S
Sbjct: 97 RQHNLPITS 105
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 780 PSLYRSASTNPSGPASSNKTNFATSRCSSLDSGSLT 673
PSLYR AST+ S +SS T+ + +S S S T
Sbjct: 46 PSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSST 81
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 487 SAIKQQRLVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 630
S + +LV ++KPI K+K K +CW +RG N
Sbjct: 51 SQLNWSKLVASGQNLSGVEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 1.8
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = -3
Query: 777 SLYRSASTNPSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIW 604
SL R +S + G ASS+ + A SS +GSL Y T V ++ R G ++T +
Sbjct: 430 SLLRRSSID--GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVT 487
Query: 603 PAVTFDLVLVVCPSSFQNRFVNTSTSSNNTDQPLLLDGRTFLAPDGSFTLVRLASGLCPI 424
+ F +S Q +SS + Q + + G+ + L+S +
Sbjct: 488 SSSIFSTATEATDTSVQTSSAIYDSSSTSNIQS---SSSVYASSTGALSSNSLSSSTSSV 544
Query: 423 TVAKFPEA 400
+ + P A
Sbjct: 545 STSYIPNA 552
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +1
Query: 457 SKATVWSQEGSAIKQQRLVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYV 612
+K + S + QR+ + GG++D P + A ++K V+ C ++
Sbjct: 326 AKIIIGSIADVTLPVQRMYYFIKAGGKLDVPTIHAFYQHYKEFVRPKCLEHI 377
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 387 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 289
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,750
Number of Sequences: 5004
Number of extensions: 74279
Number of successful extensions: 236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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