Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30470
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 134 8e-32
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.26
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 31 1.4
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 30 1.8
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.2
11_06_0754 - 26935647-26937780,26940890-26941827 29 5.6
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 5.6
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 5.6
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 5.6
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 28 7.4
08_02_0847 - 21828372-21828545,21829043-21829206,21829831-218299... 28 9.8
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 134 bits (324), Expect = 8e-32
Identities = 57/73 (78%), Positives = 64/73 (87%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 687
++G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG AST
Sbjct: 165 MIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHAST 224
Query: 688 VKRGTSAGRKVGL 726
V+R G+KVGL
Sbjct: 225 VRRDAPPGQKVGL 237
Score = 126 bits (304), Expect = 2e-29
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR P+++K +KELF+A + ++
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMY 83
Score = 124 bits (299), Expect = 8e-29
Identities = 52/81 (64%), Positives = 68/81 (83%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD
Sbjct: 83 YTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPD 142
Query: 443 AKRTRVKLPSGAKKVLPSSNR 505
+R+KLPSGAKK++PSS R
Sbjct: 143 NGTSRIKLPSGAKKIVPSSCR 163
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.26
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 525 WRWTY*QTYFESWKGIPQVQG 587
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Frame = -3
Query: 789 FRSPSLYRSASTNPSGPASSNKTNFA--TSRCSSLDSGSLTYMLMVTTTVRML-YRVHGN 619
++ P +R S +P+ P+ + F T R ++GS ++++T +++ + + G
Sbjct: 196 YKYPLNFRKNSNSPNDPSFATTFVFTITTWRDQPQEAGSDGIAFVLSSTNKLINHSLGGQ 255
Query: 618 TTYIWPAV-TFDLVLVVCPSSFQNRFVNTSTSSN---NTDQPLLLDGRT--FLAPDGSFT 457
++ A T +L + +F N +N ++ + + + ++ T F DG F
Sbjct: 256 YLGLFNASNTSQNILAIELDTFMNPDLNDMDDNHVGIDVNSLISINSHTAGFYTSDGGFQ 315
Query: 456 LVRLASGLCPI 424
L+RLA+G PI
Sbjct: 316 LLRLANGRSPI 326
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +2
Query: 365 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLT 544
EEK+ + L G +IG N K T +KL G +K +G VLL E +VL
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499
Query: 545 NLF 553
N F
Sbjct: 500 NYF 502
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.2
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 403 LWKLRHCDWT 432
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 496 KQQRLVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 615
K+ R+V IV GG I K L A Y K + + CW +VR
Sbjct: 232 KRLRVVSIVGVGG-IGKTTL-ANELYRKLRRQFECWAFVR 269
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 525 WRWTY*QTYFESWKGIPQVQG 587
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 434 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 345
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 616 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 723
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 575 WYALPAFKIGLSIRPPPATIPTSLCCLMAEPS--WLQTVA 462
W++ P+F + + P P+T+ S+ + S WL TV+
Sbjct: 496 WWSKPSFLMDHQLHPAPSTVTNSVVSRIKNSSSGWLNTVS 535
>08_02_0847 -
21828372-21828545,21829043-21829206,21829831-21829967,
21830909-21831241,21832067-21833244
Length = 661
Score = 27.9 bits (59), Expect = 9.8
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Frame = -1
Query: 722 PTLRPADVPLL-TVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFK-- 552
P RP D L V +LP+ LPPP A R+ L L + A F
Sbjct: 16 PARRPPDDTLFYAVYSLPLPTALPPP-----DLHAALRSLHLSLSSHLAPFLASHLFHRD 70
Query: 551 -IGLSIRPPPATIPTSLCCLMAEP 483
L+I PP T TS C L A P
Sbjct: 71 AFALTIPPPDHTAATSPCALCASP 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,390,468
Number of Sequences: 37544
Number of extensions: 539299
Number of successful extensions: 1629
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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