Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30470
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 1e-35
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 139 2e-33
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 38 0.009
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 1.4
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 28 10.0
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 147 bits (356), Expect = 1e-35
Identities = 65/73 (89%), Positives = 67/73 (91%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 687
LVGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ST
Sbjct: 165 LVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPST 224
Query: 688 VKRGTSAGRKVGL 726
V+R T AGRKVGL
Sbjct: 225 VRRDTPAGRKVGL 237
Score = 141 bits (341), Expect = 7e-34
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FRDPY++K RKELF+A + ++
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMY 83
Score = 139 bits (337), Expect = 2e-33
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN +
Sbjct: 83 YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVE 142
Query: 443 AKRTRVKLPSGAKKVLPSSNR 505
KRTRVKLPSG KKV+PSSNR
Sbjct: 143 KKRTRVKLPSGIKKVIPSSNR 163
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 139 bits (337), Expect = 2e-33
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN +
Sbjct: 41 YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVE 100
Query: 443 AKRTRVKLPSGAKKVLPSSNR 505
KRTRVKLPSG KKV+PSSNR
Sbjct: 101 KKRTRVKLPSGIKKVIPSSNR 121
Score = 71.3 bits (167), Expect = 8e-13
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 145 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPKALH 267
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A + ++
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2
Query: 296 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 475
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 476 AKKVLPS 496
+K + S
Sbjct: 168 VEKEVSS 174
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 591 FDLVLVVCPSSFQNRFVNT--STSSNNTDQPLLLDGRTFLAPDGSFT 457
F L V PSS QN F + + ++ T L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -1
Query: 788 LGLLLCIGLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 648
+GL L L P + P+LR +RP LRP P+L L W PP
Sbjct: 405 VGLNLVGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 451 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 278
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 277 KLACV 263
CV
Sbjct: 136 NQRCV 140
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.3 bits (60), Expect = 7.5
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Frame = -3
Query: 372 FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*S----LRSNEEL---LPCLELVW 214
F+S L T +P+ P G+TF T +V F +NW + + + +++EL L LE +W
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 213 IAEVYNSQRCTS--TRVMD 163
I + + S TR+MD
Sbjct: 1122 IRGRWTNLTDPSLKTRLMD 1140
>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 728 IRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLYLWYA 567
IRP + V L V + + WLP + + P Y +R TL+L Y+
Sbjct: 222 IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTLFLRYS 275
>SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 764 LPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 648
L P + P+LR +RP LRP P+L + W PP
Sbjct: 2 LRPMLRPMLRPMLRPMLRPMLRPMLQYKL-----WCQPP 35
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 338 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGWS 514
P G I+ + +GD+ R +GN T A + +PS L + +R WS
Sbjct: 218 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 275
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 338 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGWS 514
P G I+ + +GD+ R +GN T A + +PS L + +R WS
Sbjct: 332 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 389
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,371,559
Number of Sequences: 59808
Number of extensions: 601347
Number of successful extensions: 1593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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