Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30470
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.81 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.81 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 425 IGHNPDAKRTRVKLPSGAKKVLPSSNRGWSVLLLE 529
           IG+  + K+TR  LP+G +KVL  + +   VL+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 783 SPSLYRSASTNPSGPASSNKTNFATSRCSS 694
           S S   S +  P  PASS+ ++  TS CSS
Sbjct: 578 SDSGIESGTEKPDKPASSSASSAPTSVCSS 607


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 376 HFLFKIAHNGTLRHSSNRHHI 314
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 376 HFLFKIAHNGTLRHSSNRHHI 314
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 376 HFLFKIAHNGTLRHSSNRHHI 314
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 376 HFLFKIAHNGTLRHSSNRHHI 314
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 183 CTFGCCTLPRSIQVQDKEGALHCSEGSTQANLFI 284
           C FG   +  S  V +   + H  +GS +A  F+
Sbjct: 174 CIFGNRLIEESSSVMEAAYSCHWYDGSEEAKTFV 207


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 774 LYRSASTNPSGPASS 730
           +YR +++NP G AS+
Sbjct: 307 IYRCSASNPGGEASA 321


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 774 LYRSASTNPSGPASS 730
           +YR +++NP G AS+
Sbjct: 307 IYRCSASNPGGEASA 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,029
Number of Sequences: 438
Number of extensions: 5481
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)