Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30470
(791 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 135 4e-32
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 134 5e-32
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 130 1e-30
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 4e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 44 1e-04
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 44 1e-04
At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) l... 29 3.5
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 4.7
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 6.2
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 28 6.2
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 135 bits (326), Expect = 4e-32
Identities = 58/72 (80%), Positives = 62/72 (86%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 687
++G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG AST
Sbjct: 166 MIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHAST 225
Query: 688 VKRGTSAGRKVG 723
V+R SAG KVG
Sbjct: 226 VRRDKSAGAKVG 237
Score = 126 bits (304), Expect = 2e-29
Identities = 53/81 (65%), Positives = 70/81 (86%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HNP+
Sbjct: 84 YTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPE 143
Query: 443 AKRTRVKLPSGAKKVLPSSNR 505
+ TRVKLPSG+KK+LPS+ R
Sbjct: 144 SNTTRVKLPSGSKKILPSACR 164
Score = 119 bits (287), Expect = 2e-27
Identities = 56/84 (66%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 195
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 196 VVHFRDPYKFKTRKELFIAPKALH 267
V FR P+++ +KELF+A + ++
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMY 84
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 134 bits (325), Expect = 5e-32
Identities = 57/73 (78%), Positives = 64/73 (87%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 687
++G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG AST
Sbjct: 165 MIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHAST 224
Query: 688 VKRGTSAGRKVGL 726
V+R G+KVGL
Sbjct: 225 VRRDAPPGKKVGL 237
Score = 127 bits (306), Expect = 1e-29
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR P++FK +KELF+A + ++
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMY 83
Score = 121 bits (292), Expect = 5e-28
Identities = 51/81 (62%), Positives = 67/81 (82%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HNPD
Sbjct: 83 YTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPD 142
Query: 443 AKRTRVKLPSGAKKVLPSSNR 505
+R+KLPSG+KK++PS R
Sbjct: 143 NDTSRIKLPSGSKKIVPSGCR 163
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 130 bits (314), Expect = 1e-30
Identities = 56/73 (76%), Positives = 63/73 (86%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAST 687
++G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG AST
Sbjct: 165 MIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHAST 224
Query: 688 VKRGTSAGRKVGL 726
V+R G+KVGL
Sbjct: 225 VRRDAPPGQKVGL 237
Score = 127 bits (306), Expect = 1e-29
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR P++FK +KELF+A + ++
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMY 83
Score = 126 bits (304), Expect = 2e-29
Identities = 54/81 (66%), Positives = 69/81 (85%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HNPD
Sbjct: 83 YTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPD 142
Query: 443 AKRTRVKLPSGAKKVLPSSNR 505
+ TR+KLPSG+KK++PS R
Sbjct: 143 SDTTRIKLPSGSKKIVPSGCR 163
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 577 KYKVKRNCWPYVRGVAM-NPVEHPHGG 654
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 308 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKK 484
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTK 116
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +1
Query: 580 YKVKRNCW----PYVRGVAMNPVEHPHGGG 657
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 308 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKK 484
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTK 116
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +1
Query: 580 YKVKRNCW----PYVRGVAMNPVEHPHGGG 657
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 3 (ASHH3)
partial cds GI:15488419
Length = 363
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 624 GNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSSNNTDQPLLLDGRT 484
G T + +T D+V+ ++R++N S + N Q ++DG T
Sbjct: 166 GETNFYLCEITRDMVIDATHKGNKSRYINHSCNPNTQMQKWIIDGET 212
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 553 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 714
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 525 WRWTY*QTYFESWKGIPQVQG 587
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -1
Query: 395 PDDLYHPFSLQDCTQWYPQA*-LQQASHFQLQELLSFHNKQIGLCRAFGAMKSSFLVLNL 219
P YH S + + P +QQ S +L + ++ + R FG+ ++S+ L L
Sbjct: 210 PQPFYHHLSSYNPHHYSPPTFSMQQGSRNRLSASTTSYSLPLKKLRVFGSYQASYHHLLL 269
Query: 218 YGSRKCTTAKGAPLPGSWIIS 156
SR KG SW+IS
Sbjct: 270 LRSRAILWFKGC----SWLIS 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,067
Number of Sequences: 28952
Number of extensions: 407219
Number of successful extensions: 1221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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