Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30469
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 60 2e-10
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 43 5e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 41 1e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 3e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 3e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 39 8e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.002
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.002
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 37 0.002
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 37 0.003
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.016
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.022
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.038
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 33 0.038
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.050
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.066
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.066
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.12
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 31 0.12
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.47
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.62
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.1
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 1.9
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 1.9
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.5
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 27 3.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 3.3
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 4.4
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 60.5 bits (140), Expect = 2e-10
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TT++++RDYF FG++L V RD+ TG S+GFGF+ F + + + H +DG+ D
Sbjct: 174 TTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIID 233
Query: 183 VR--IPNGKDGSSTAHRKVFVG 242
+ IP ++ TA K+FVG
Sbjct: 234 PKRAIPR-EEQEKTA--KMFVG 252
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
+ T + LR+YF FG+V D V R R F F+TF +P+ + ++H + G +
Sbjct: 173 ETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKII 232
Query: 419 NISTASPKRERSTTAASGLG 478
+ A P+ E+ TA +G
Sbjct: 233 DPKRAIPREEQEKTAKMFVG 252
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHM-IDGRWCD 182
TEE R++F+ FG +L + D TG +GFGF+ + A + + ++ I G+ +
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
Query: 183 VRIPNGKDGSSTAH 224
V+ K +H
Sbjct: 319 VKRATPKASLRDSH 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 152
T EE +RD F FG + V + +D TG +KGF F+ + + + ++A R
Sbjct: 213 TREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDR 262
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
T + + D FS FG +L + +G+SKG+GF+ F + EA +RA
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHM 161
TEE V D F+ FG + + + D RTG KG+ I++A E +A+ +++
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNL 73
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/85 (30%), Positives = 43/85 (50%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDV 185
T+E V+ F FGD+ V ++RD + SKGFG+I++ + AL + + D ++
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNALEKMNGFDLAGRNM 410
Query: 186 RIPNGKDGSSTAHRKVFVGRCTEIL 260
R+ G D +T + R E L
Sbjct: 411 RVCLGNDKFTTETTSSMLKRFDETL 435
Score = 29.9 bits (64), Expect = 0.35
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T + D+F G + Q+ RD +G SKG +++F ++ A+
Sbjct: 252 TSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWC- 179
TE+ + F GD+ +++ D ++G KGFG++ F++ ++ + + H I GR C
Sbjct: 378 TEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCR 437
Query: 180 -DVRIPNGKDGSSTAHRKVFVGR 245
D P G S R F GR
Sbjct: 438 LDFSTPR-TGGGSRGGRGGFGGR 459
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMIDGRWCDVRIPN 197
F +G ++ +V D ++G SKG+G++ F EA A+ IDGR ++ + N
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 38.7 bits (86), Expect = 8e-04
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
E+ +R YFS FG +L +++ R+ +TG SK + FI+F
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEF 153
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
E+ + FS FG+ + + + RD TG SKGF F+K+ + + + A+
Sbjct: 44 EDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TT+ ++++F G + V++ TG KGFGF+ F + + ++A+ H W
Sbjct: 239 TTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGH---NSW-- 293
Query: 183 VRIPNGKDGSSTAHRK 230
R+ G+D S K
Sbjct: 294 -RLEYGEDRSKRMRNK 308
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
E+ ++ FS FG + V++ R+ T S+GFGF+ F+ E A+
Sbjct: 114 EDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA--LGRRHMIDGR 173
EE + YF G + V++ RD +T L KGF +I+F + +A L + M +GR
Sbjct: 283 EEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGR 339
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TE+ D F FG++ + + +D + +GFGF+ +A +E +A+
Sbjct: 273 TEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAV 318
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 12 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+A+ D FS+FG +L +V D G +KG+GF+ F E+ A+
Sbjct: 182 KALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAI 225
Score = 33.5 bits (73), Expect = 0.029
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRPF----RAFSFVTFLDPEVARSLCGQ--DHIIKGVS 415
+IT ++ + FG FG++T + + + R F FV + + E A+ + D KG
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Query: 416 VNISTASPKRER 451
+ + A K ER
Sbjct: 331 LYVGRAQKKHER 342
Score = 33.1 bits (72), Expect = 0.038
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDGRWCD 182
+E ++ FS+FG + ++ D + G SKGFGF+ + E +A+ + M+ G+
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLY 435
Query: 183 VRIPNGKDGSSTAHRKVFVGRCTEILQPKISESTSAPLVK 302
V + K+ + R LQ +++ + P V+
Sbjct: 436 VALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQ 475
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
+E++ FS + L+ +V RD R G ++GFGF+ F + + L+A
Sbjct: 43 DESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKA 86
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.038
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 128
TE+ + ++F FG L ++ +D T S G GFIKF YE
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF-RYE 328
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
T ++ + ++FS G + V + TG ++G+GF+ F+ E RA
Sbjct: 16 TKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 84 GLSKGFGFIKFAEYEAQLRAL 146
G SKGFGF++F ++ L AL
Sbjct: 536 GRSKGFGFMQFISHKYALMAL 556
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.1 bits (72), Expect = 0.038
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMV-QVKRDTRTGLSKGFGFIKFAEYE 128
E + D FS+ G L+ QV RD G SKG+GF+ + +E
Sbjct: 112 ERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFE 151
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 32.7 bits (71), Expect = 0.050
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 122
T E ++ +F+S G + V + D TG KGF +I+F+E
Sbjct: 67 TPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE 105
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.066
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 18 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--GRRHMIDGRWCDVRI 191
V+DYF +G LL V+V +D L + + F++F + +AL + ++DGR +RI
Sbjct: 99 VKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGR--HIRI 153
Query: 192 PNGK 203
K
Sbjct: 154 ERAK 157
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.3 bits (70), Expect = 0.066
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
E+ ++ F FG L V + D +T KGF +I F + + +RA
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 185 SHPERQGRLVDGSSKGIRRPLYGDITAEDLREYFGSFGQVTDVFVP 322
S ER +L+ + + R L +DL+ FG FGQ+ V +P
Sbjct: 310 SEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMP 355
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRPF----RAFSFVTFL 358
+ T +D++ G++GQ+ V VP+ F R F+F F+
Sbjct: 731 EATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFV 769
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
E+ V + FGDLL Q+ ++ G SKGF F +F
Sbjct: 323 EDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 31.5 bits (68), Expect = 0.12
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Frame = -2
Query: 450 LSRFGDAVEMFTDTPFII*SCPHKDLATSGSRNVTKLNARKGRGTNTSVT*PKEPKY--- 280
LSR +A + P P + L S +N+TKLN K + P +
Sbjct: 270 LSRMSNAFDNMQLPP----DAPERSLLVSKQKNITKLNNEKRIPPQLAQPTSHVPSFIDT 325
Query: 279 ---SLRSSAVISPYNGR-RIPFDEPSTSRPCRSGCEHR-TSARLSCVGGLMHAVEL 127
S+ S + +S Y + RIP S P S HR TS LS G AV L
Sbjct: 326 NSPSMPSISSVSSYQQQHRIPKLNASNYSPLLSPSSHRKTSGNLSRTGSESSAVSL 381
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 29.5 bits (63), Expect = 0.47
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 27 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+ S + ++ D +T +S+G+GF++F + Q AL
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.62
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLL----MVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--GRRHMI 164
TTE++ D F +F + ++ D TGLS+ +GF++F+ + Q AL + ++
Sbjct: 192 TTEDS--DLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLC 249
Query: 165 DGRWCDVRIPNGKDGSSTA 221
GR + + + K +S A
Sbjct: 250 QGRPLRISVASPKSRASIA 268
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE-YEA 131
+ + + FS FG + + T +SKG+GF+ F+ +EA
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEA 475
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 412 VSKHFNSITKARKVHYCSQWARLGPY 489
++K F+ + K K +C W RL PY
Sbjct: 847 INKTFSVVLKIHKTAFCPFWERLLPY 872
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +2
Query: 257 ITAEDLREYFGSFGQVTDVFVPRPF---RAFSFV---TFLDPEVARSLCGQDHIIKGVSV 418
+ +D+ +F +GQV V +P+ F + F +V T D E A S G+ + +
Sbjct: 768 VNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQ--LGNRVL 825
Query: 419 NISTASPKRERSTTAAS 469
N+ + P+ T S
Sbjct: 826 NVVLSKPRESLEKTRVS 842
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 57 VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
++++ + R G +GFGF+ FA E Q RA+
Sbjct: 248 IKLRGEQRRG--RGFGFVSFANAEDQSRAI 275
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 512 GHSRHPIPSSQSPTSNTSKLCLLFSTNLHC 601
G + H +P+ + P+S + L +L+ST C
Sbjct: 85 GSALHIVPADEIPSSKSCILTILYSTTKDC 114
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCG--QDHIIKGVSVNISTA 433
T ED+ ++F +GQ+ D + F FV D AR + Q G + + A
Sbjct: 16 TREDMMDFFKGYGQILDC---KLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPA 72
Query: 434 SPKRER 451
+R R
Sbjct: 73 RGERRR 78
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 315 NTSVT*PKEPKYSLRSSAVISPYNGRRIPFDEPST 211
N +++ P P +++ + SP++GR P D PST
Sbjct: 335 NMNISYPSVPAHTVSTDIRSSPFSGR--PSDNPST 367
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 185 NIAPAPVYHVSAA*CTQLSFVLGEFDEAKTFG 90
N A P+YHV A+ C S + D AKT+G
Sbjct: 470 NGALLPIYHVDASAC---SISISLMDIAKTYG 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,066
Number of Sequences: 5004
Number of extensions: 62103
Number of successful extensions: 245
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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