Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30469
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 49 3e-06
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 48 7e-06
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 46 2e-05
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 46 4e-05
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 45 5e-05
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 44 2e-04
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 42 3e-04
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 42 3e-04
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 37 0.013
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 37 0.013
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 37 0.017
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.030
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.030
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 35 0.070
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 34 0.12
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 33 0.16
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 33 0.21
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 32 0.49
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.49
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 31 0.65
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_8648| Best HMM Match : C2 (HMM E-Value=0.98) 31 0.86
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 1.1
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_42811| Best HMM Match : SRCR (HMM E-Value=0) 29 2.6
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 29 2.6
SB_35076| Best HMM Match : Paf1 (HMM E-Value=0.83) 29 2.6
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 29 3.5
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 29 4.6
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 29 4.6
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_15552| Best HMM Match : SCP (HMM E-Value=3.6) 28 8.0
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TTE +++YF+ FG++ +VK D T S+GFGF++F + E L H I GR C+
Sbjct: 126 TTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCE 185
Query: 183 VRIPNGKDGSSTAHRKVFVGRCTE 254
VR+P K+ +K+FVGR E
Sbjct: 186 VRLPRPKE-ELNVPKKLFVGRLPE 208
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPRPFRAFSFVTF 355
T + L EYF FG+VTDV++P+PFR F FVTF
Sbjct: 211 TEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTF 242
Score = 34.3 bits (75), Expect = 0.092
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVP-----RPFRAFSFVTFLDPEVARSLCGQDHIIKGVSVNI 424
T +++EYF FG++ V R R F FV F E A+++ H I+G +
Sbjct: 127 TESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEV 186
Query: 425 STASPKRE 448
PK E
Sbjct: 187 RLPRPKEE 194
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 119
TTE+ + +YF+ FG++ V + + R FGF+ FA
Sbjct: 210 TTEKTLMEYFAQFGEVTDVYIPKPFR-----HFGFVTFA 243
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 58.8 bits (136), Expect = 4e-09
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-----HMID 167
TT E +R+YF ++G+L V V D+ T S+GFG++ FA+Y+ L + H ID
Sbjct: 25 TTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRID 84
Query: 168 GRWCDVR--IPNGKDGSSTAH---RKVFVGRCTE 254
G+ +V+ IP D S+T+H +K+FVG E
Sbjct: 85 GKEVEVKRAIPR-DDNSATSHEKTKKIFVGGLPE 117
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFV-----PRPFRAFSFVTFLDPEVARSLCGQD-----HII 403
+ T E LREYF ++G++TDV V + R F +VTF D +V R++ H I
Sbjct: 24 ETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRI 83
Query: 404 KGVSVNISTASPKRERSTTA 463
G V + A P+ + S T+
Sbjct: 84 DGKEVEVKRAIPRDDNSATS 103
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLL-MVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRW 176
TTEE ++DYFS +G ++ V +KRD G S+GFGF+ + ++ L ++ H++D R
Sbjct: 61 TTEEGLKDYFSQWGTIVDCVIMKRD---GRSRGFGFVTYESSDSVNEVLKKKDHVLDDRE 117
Query: 177 CDVR--IPNGKDGSSTA---HRKVFVG 242
+ + +P + G+ A RK+FVG
Sbjct: 118 IEPKRSVPRDESGAPEAMSKTRKIFVG 144
Score = 34.3 bits (75), Expect = 0.092
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Frame = +2
Query: 266 EDLREYFGSF------GQVTDVFV------PRPFRAFSFVTFLDPEVARSLCGQD-HIIK 406
ED++EYF S G+V DV + P+ R F+FVTF + E+ +C H I+
Sbjct: 153 EDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIR 212
Query: 407 GVSVNISTASPK 442
+ A P+
Sbjct: 213 MKQCEVKKAEPQ 224
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T EE ++DYF FG++ V++ R T G S+ +GF+ F + L + H+I+G+ D
Sbjct: 91 TDEEGLKDYFEQFGEVESVRIMR-TFLGYSRNYGFVLFKDDGPSKEVLKKSHVINGKTVD 149
Query: 183 VRIPNGKDGSSTAHRKVFVG 242
V G S R ++VG
Sbjct: 150 V-------GKSRNFRVIYVG 162
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFVPRPF----RAFSFVTFLDPEVARSLCGQDHIIKGVSVNI 424
E L++YF FG+V V + R F R + FV F D ++ + + H+I G +V++
Sbjct: 94 EGLKDYFEQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKEVLKKSHVINGKTVDV 150
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIK 113
T E V YF +G + V + D TG SKG G +K
Sbjct: 330 TKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVK 366
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/38 (44%), Positives = 29/38 (76%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
TT+E++++YFS +G+L+ V +K D TG +GF F++F
Sbjct: 40 TTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQF 77
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRW 176
+ ++ F +G + + + R T+TG SKGFG++ + E+ RAL H+IDG+W
Sbjct: 76 KSSLESVFGPYGAIEDLSIIR-TQTGKSKGFGYVTYENAESAQRALAGTHIIDGKW 130
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP----FRAFSFVTFLDPEVARSLCGQDHIIKGVSVN 421
DI L FG +G + D+ + R + F +VT+ + E A+ HII G V
Sbjct: 73 DIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRALAGTHIIDGKWVI 132
Query: 422 ISTASPKR 445
P R
Sbjct: 133 AEPKMPTR 140
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE-AQLRALGRRHMIDGRWCDV 185
++A+R +F+ FG++ V +D T SKG+GF+ A + A+L +R MI+GR +V
Sbjct: 23 DDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEGRQANV 82
Query: 186 RI 191
+
Sbjct: 83 NL 84
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDV 185
TE V+ F FG + VQ+ D+ T SKG+GF++F E EA RA+ + + + +
Sbjct: 254 TEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPL 313
Query: 186 RI-PNGKDGSSTAH 224
+I P + G S+A+
Sbjct: 314 KIGPVTERGDSSAY 327
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 18 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 149
+ ++FS G + V++ D + SKG +I+F + A A+G
Sbjct: 162 LEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIG 205
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+E +R F SFGD+ VQ+ RD +T +KG+G++KF + AL
Sbjct: 66 DEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMAL 111
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/70 (31%), Positives = 42/70 (60%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 188
EE +R+ F++ G++ V++ RD +TG+ KGFG++ F +A + AL + + + + +R
Sbjct: 69 EEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFAL-KMNNAEFKGRKIR 127
Query: 189 IPNGKDGSST 218
+ KD T
Sbjct: 128 VFPSKDKPQT 137
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMV-QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
E+ + D FS+FG +L ++ RD+ TG SKGF FI FA ++A A+
Sbjct: 113 EKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAI 159
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 122
E+ V++ SSFG+L + +D+ TGLSKG+ F ++ +
Sbjct: 686 EDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVD 723
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIK---FAEYEAQLRALGRRHM----ID 167
E+ + + FS +G++ + V D RTG KG+ ++ F E ++ L AL M I
Sbjct: 306 EDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNIS 365
Query: 168 GRWCDVRIPNGKDGSSTA 221
W +R P+ K S A
Sbjct: 366 VDWAFIRGPSKKSRSLQA 383
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 122
TT E ++ F +GDL + + RD T S+GF F++F E
Sbjct: 27 TTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPR-----PFRAFSFVTFLD 361
T EDL++ F +G + D+++PR R F+FV F +
Sbjct: 28 TVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR-RHMID 167
T E + +YFS+ G+ + T +G SKGF F++ + EA LGR H+ID
Sbjct: 53 TVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAVESVLGRDDHVID 108
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
TT+E + FS FG +L +V RD +TG S + FI+F + E RA
Sbjct: 131 TTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERA 177
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 12 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA 131
E +R +F FG+L V RD T S+GFGF+ F + +A
Sbjct: 122 EGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKA 161
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPE 367
+AE LR++F FG++ + V R R F F+TF DP+
Sbjct: 120 SAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPK 160
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+E +R+ FS +G + +V +D + G SKGFGF+ F+ E +A+
Sbjct: 225 DERLREEFSPYGTISSAKVMKDDK-GNSKGFGFVCFSSPEEATKAV 269
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 35.9 bits (79), Expect = 0.030
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMID 167
E+ ++ F +FG ++ + ++ TG KG+GFI++ ++ A+ ++ D
Sbjct: 212 EDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFD 264
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMI 164
T+E++ F+ + L ++ RD ++ SKG+GF+ F + ++A+ +++
Sbjct: 229 TDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREMNVL 281
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
E ++ +F FG + +++ R ++ SKG+ F++FA E A H M+ GR
Sbjct: 111 ENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGR 167
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
E+ + F FGD+ VQ+ D T +GFGF++F
Sbjct: 18 EKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEF 53
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI---KFAEYEAQLRAL 146
E R F ++G+++ ++ RD TGL KG GF+ K AE +A + +L
Sbjct: 146 EAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
TE D S +G++ + + R TG SKG+GF+++A E ++A
Sbjct: 125 TETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQA 170
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +3
Query: 18 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPN 197
+++ FS G++ QV + G S+GF F+ +A E + + ++R+
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRVAY 281
Query: 198 GKDGSSTA 221
G G + A
Sbjct: 282 GSPGRTGA 289
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKG 98
TTE + +FS+FG + V++ D RTGL+KG
Sbjct: 1077 TTELELETFFSNFGPVADVRIVCDRRTGLNKG 1108
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T E +++ F G + + + +D T SKGF FI F E RA+
Sbjct: 192 TRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAI 239
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 257 ITAEDLREYFGSFGQVTDVFVPRPFR----AFSFVTFLDPEVA 373
I+ +DLR F FG V DV + RP R ++FV F D +VA
Sbjct: 248 ISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVA 290
>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 357 RNVTKLNARKGRGTNTSVT*PKEPKYSLRSSAVISPYNGRRIPFDEPSTSRPCRS-GCE- 184
R L+ + + + TS++ P P +L P RRIP +EP+ P R G E
Sbjct: 108 RRRKSLSEDQTKVSQTSLSMPLSPNATLNPMKHPGP---RRIPREEPAPGLPLREMGSEI 164
Query: 183 HRTSARLSCV 154
HRT A + CV
Sbjct: 165 HRTGAFIDCV 174
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 69 RDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGR 173
+D ++G SK +GF+ F + EA +A+G + H I+G+
Sbjct: 95 KDLKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQ 130
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+T++ + + F FGD+ +V D T SKG F+K+ E+ + L
Sbjct: 427 STQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCL 474
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
E+A+ + F D++ V+V D TG +GFGF+ F E +A+
Sbjct: 18 EQALEEKFHGC-DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAI 62
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.5 bits (68), Expect = 0.65
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDV-FVPRPFRAF-SFVTFLDPEVARSLCGQDHIIKGVSV 418
L G +T +DLR++F FG++ + VPR AF F + E A I+KG +
Sbjct: 311 LEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRAAAEAAADRSFNKLILKGRRL 370
Query: 419 NISTASPKRERSTTAASG 472
I + ++ G
Sbjct: 371 KIMWGKSQGQQPAPGRQG 388
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 31.1 bits (67), Expect = 0.86
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Frame = +3
Query: 3 TTEEAVRDYFSSF-----GDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL---GRRH 158
TTEE VR YF SF D+ V + + T G S+ F F++F+ + + H
Sbjct: 19 TTEETVRAYFKSFCEGSEADVSSVSLAK-TPEGKSRKFCFVEFSNGSDIIDNIVFNFESH 77
Query: 159 MIDGRWCDV-RIPNGKDGSSTAH---RKVFVGRCTEILQPKISESTSAPL 296
ID + +V R D + AH +K+F+G + + ++ APL
Sbjct: 78 SIDNKQVEVKRAMPRDDPNELAHVRTKKLFIGGLKDEHSEEDVKTALAPL 127
>SB_8648| Best HMM Match : C2 (HMM E-Value=0.98)
Length = 273
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 517 LPAPHPLESKPYLKYE*TVPPVLHKPTL 600
LP P PL+S YL T+P + H PTL
Sbjct: 87 LPTPRPLDSVVYLMTGHTLPTLPHSPTL 114
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 18 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
++ FS FG +L V + R G KGF FI+F
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEF 136
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 323 RPFRAFSFVTFLDPEVARS-LCGQDHIIKGVSVNISTASPK 442
R + F FVTF DP S L + HI+ G +++ A P+
Sbjct: 139 RMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPR 179
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 72 DTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCDVR--IPNG 200
+ R + KGFGF+ F + L ++ H++DG+ D + +P G
Sbjct: 135 ERRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRG 180
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +3
Query: 39 FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA--------LGRRHMIDGRWCDVRIP 194
+G+++ V + RD +TG KGF F+ + + + + A LG R + + R P
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDHCSNYRRP 61
Query: 195 NGKDGSSTAHRKVFV 239
G + +RK +
Sbjct: 62 KGDEKDDEGNRKEII 76
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 48 LLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR--RHMIDGR 173
LL V+V D TG +GFGF+ F + +A+ + +DGR
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGR 78
>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
Length = 854
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = -2
Query: 393 SCPHKDLATSGSRNVTKLNARKGRGTNTSVT*PKEPKYSLRSSAVISPYNGR-RIPFDEP 217
SC HKD N + NA +G N EP + ++ +P P P
Sbjct: 554 SCSHKDDVGVVCSNEREYNALHRKGKNAGAVCSNEP-IEVPTTVPATPKPASPTFPLTGP 612
Query: 216 STSRPCRSG 190
+RPC++G
Sbjct: 613 CMTRPCKNG 621
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +3
Query: 39 FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+G+++ V + RD +TG KGF F+ + + + + A+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAV 37
>SB_35076| Best HMM Match : Paf1 (HMM E-Value=0.83)
Length = 1010
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 362 PEVARSLCGQDHIIKGVSVNISTASPKRERSTTAASGL 475
P +A ++C Q + VN+ ++SP + + +++GL
Sbjct: 175 PSIASTVCRQSDALVTTEVNVQSSSPVKNKGIASSTGL 212
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 42 GDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
G++ +++ D TGL+KGF F F E + +A+
Sbjct: 177 GEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAI 211
>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 218 RRRAVLAVRDANIAPAPVYHVSAA*CTQLSFVLGEFDEAKTFG 90
RR+ +L+ D N AP P +S CT L E D++ FG
Sbjct: 328 RRQEILSCYDGNRAPRPSTALSTDKCTLAKKGLPERDQSAMFG 370
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +3
Query: 474 SVGAVCLAGQLIMATPGTPSPRVKALP-----QIRVNCASCSPQTYIVNSFQILYETNC 635
+ V L GQL +A P TP+P+ P NC + P I+++ + NC
Sbjct: 3817 TTSCVDLVGQLPVAPPPTPTPKPPVTPVSTCSSAEFNCVAEGPNACILSTQVCDFSKNC 3875
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 89 IQRFWLHQIRRVRSSTACIRPPTHDRRALVRCSHPERQGRLVDGSSKGIRRPLYGDITAE 268
+ RF+ + RR+R T C A V+ P L++ ++G RR Y +
Sbjct: 610 LHRFYRLRSRRLRHLTCCFIEDVTSSCAFVQIGKPVVPAALMNRPTRGERRFAYWALAEC 669
Query: 269 DLREYFGSFGQVTDV 313
L Y G+ V++V
Sbjct: 670 ILAYYVGTDEGVSEV 684
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Frame = -2
Query: 393 SC-PHKDLATSGSRNVTKLNARKGRGTNTSVT*PKEPKYSLRSSAVISPYNGRRIPFDEP 217
SC PH A + +NVT L G NT + P ++ + G+ I
Sbjct: 1280 SCTPHVHAAHADRQNVTSLRLLNGTSPNTCLGRPSVFRFCENRQGTLRCPKGKVIVMAYA 1339
Query: 216 STSRPCRSGCEHRTSARLSC 157
+ R + C H + C
Sbjct: 1340 NYGRTAKGVCRHNSIKTTCC 1359
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 110
E + F FG + V + RD +G S+GFGF+
Sbjct: 22 EGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFV 54
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 453 PLLQPVGSVGAVCLAGQL-IMATPGTPSPRVKALPQIRVN 569
P+ P ++ AV A + ATP P P A PQ +N
Sbjct: 1433 PIATPAAAIPAVAAAAAMPAAATPAAPVPAPSAPPQPEIN 1472
>SB_15552| Best HMM Match : SCP (HMM E-Value=3.6)
Length = 154
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 101 WLHQIRRVRSSTACIRPPTH 160
W+ Q+ + +SS AC PP H
Sbjct: 87 WIGQLGKYKSSGACTNPPAH 106
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 57 VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
V+V +D SKGFGF+ F E +A+
Sbjct: 542 VRVVKDPAKNKSKGFGFVSFVRREDAAKAI 571
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,462,710
Number of Sequences: 59808
Number of extensions: 525058
Number of successful extensions: 1705
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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