Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30469
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    24   1.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   2.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   2.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   2.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.7  

>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSSTSNTSKTVIL 102


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDKSNTSNTSKTIIL 102


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSNTSNTSKTVIL 102


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSNTSNTSKTVIL 102


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSNTSNTSKTVIL 102


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSNTSNTSKTVIL 102


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSNTSNTSKTVIL 102


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSNTSNTSKTIIL 102


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 30  FSSFGDLLMVQVKRDTRTGLSKGFG 104
           F+  G+ L    K D  TGL +GFG
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFG 180


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSNTSNTSKTIIL 102


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPDSRDRSNTSNTSKTVIL 102


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 30  FSSFGDLLMVQVKRDTRTGLSKGFG 104
           F+  G+ L    K D  TGL +GFG
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFG 180


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 ADHGHSRHPIPSSQSPTSNTSKLCLL 580
           ++   SR P    +S TSNTSK  +L
Sbjct: 77  SERSKSRSPGSRDRSNTSNTSKTVIL 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,781
Number of Sequences: 438
Number of extensions: 4556
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)