Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30469
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 62 4e-10
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 62 4e-10
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 62 4e-10
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 60 1e-09
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 59 3e-09
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 58 5e-09
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 58 5e-09
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 57 9e-09
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 57 9e-09
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 54 9e-08
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 52 3e-07
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 51 6e-07
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 51 6e-07
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 51 8e-07
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 51 8e-07
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g51300.2 68418.m06360 splicing factor-related contains simila... 49 3e-06
At5g51300.1 68418.m06359 splicing factor-related contains simila... 49 3e-06
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 48 6e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 48 8e-06
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 48 8e-06
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 47 1e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 46 2e-05
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 45 5e-05
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 44 7e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 44 9e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 9e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 44 9e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 1e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 1e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 43 2e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 43 2e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 43 2e-04
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 43 2e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 43 2e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 42 3e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 42 3e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 42 3e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 5e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 42 5e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 42 5e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 41 7e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 41 9e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 9e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 41 9e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 41 9e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 41 9e-04
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 40 0.001
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 40 0.001
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 40 0.001
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 40 0.001
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 40 0.002
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.002
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 39 0.003
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 39 0.003
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.003
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 39 0.003
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 39 0.003
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 39 0.003
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.005
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 38 0.005
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.005
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.006
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.006
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 38 0.006
At1g51520.2 68414.m05799 expressed protein contains a weak hit t... 38 0.006
At1g51520.1 68414.m05798 expressed protein contains a weak hit t... 38 0.006
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 38 0.006
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 38 0.008
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 38 0.008
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 37 0.011
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 37 0.011
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 37 0.011
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 37 0.014
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 37 0.014
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 37 0.014
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 36 0.019
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 36 0.019
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 36 0.019
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 36 0.025
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 36 0.033
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.033
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 36 0.033
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 36 0.033
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 36 0.033
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.033
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.043
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 35 0.043
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.043
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 35 0.043
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 35 0.057
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 35 0.057
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 35 0.057
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 35 0.057
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 34 0.075
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 34 0.075
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.075
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.075
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 34 0.099
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 34 0.099
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 0.099
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 34 0.099
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.099
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 34 0.099
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.13
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 33 0.17
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.17
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 33 0.17
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 33 0.17
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 33 0.17
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 33 0.23
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 33 0.23
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.23
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.30
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 32 0.30
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 32 0.30
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.40
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.40
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.40
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 31 0.53
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 31 0.53
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 31 0.53
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 31 0.53
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.53
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 31 0.70
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.93
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 31 0.93
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.93
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.93
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 30 1.2
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.2
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 30 1.2
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.2
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 30 1.2
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 30 1.6
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 30 1.6
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 30 1.6
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.6
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 2.1
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 2.1
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 2.8
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 3.7
At4g12450.1 68417.m01970 expressed protein 29 3.7
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 3.7
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 28 4.9
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 28 4.9
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 28 6.5
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 28 6.5
At2g47070.1 68415.m05881 squamosa promoter-binding protein-like ... 28 6.5
At1g60830.1 68414.m06846 U2 snRNP auxiliary factor large subunit... 28 6.5
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +H+IDGR +
Sbjct: 17 TDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVE 76
Query: 183 VRIPNGKDGSSTAHR 227
+ +D R
Sbjct: 77 AKKAVPRDDQQVLKR 91
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
D E LR+YF ++G V + + R R F F+ F DP V+ + HII G +V
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTV 75
Query: 419 NISTASPKRER 451
A P+ ++
Sbjct: 76 EAKKAVPRDDQ 86
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TEE ++YF FG + V V D T +GFGFI F +A R L + H ++G+ +
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 183 VR 188
V+
Sbjct: 182 VK 183
Score = 40.7 bits (91), Expect = 9e-04
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Frame = +2
Query: 152 PTHDRRALVRCSHPERQGRLVDGSSKGIRRPLYG----DITAEDLREYFGSFGQVTDVFV 319
P D++ L R + P V G ++ G IT E+ + YF FG + DV V
Sbjct: 82 PRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
Query: 320 ------PRPFRAFSFVTF-LDPEVARSLCGQDHIIKGVSVNISTASPK 442
RP R F F+TF D V R L H + G V + A PK
Sbjct: 142 MYDHNTQRP-RGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +H+IDGR +
Sbjct: 17 TDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVE 76
Query: 183 VRIPNGKDGSSTAHR 227
+ +D R
Sbjct: 77 AKKAVPRDDQQVLKR 91
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
D E LR+YF ++G V + + R R F F+ F DP V+ + HII G +V
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTV 75
Query: 419 NISTASPKRER 451
A P+ ++
Sbjct: 76 EAKKAVPRDDQ 86
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TEE ++YF FG + V V D T +GFGFI F +A R L + H ++G+ +
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 183 VR 188
V+
Sbjct: 182 VK 183
Score = 40.7 bits (91), Expect = 9e-04
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Frame = +2
Query: 152 PTHDRRALVRCSHPERQGRLVDGSSKGIRRPLYG----DITAEDLREYFGSFGQVTDVFV 319
P D++ L R + P V G ++ G IT E+ + YF FG + DV V
Sbjct: 82 PRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
Query: 320 ------PRPFRAFSFVTF-LDPEVARSLCGQDHIIKGVSVNISTASPK 442
RP R F F+TF D V R L H + G V + A PK
Sbjct: 142 MYDHNTQRP-RGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T EE +RDYFS++GD++ + RD TG ++GFGFI FA+ R + +H+IDGR +
Sbjct: 17 TDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVE 76
Query: 183 VRIPNGKDGSSTAHR 227
+ +D R
Sbjct: 77 AKKAVPRDDQQVLKR 91
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
D E LR+YF ++G V + + R R F F+ F DP V+ + HII G +V
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTV 75
Query: 419 NISTASPKRER 451
A P+ ++
Sbjct: 76 EAKKAVPRDDQ 86
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TEE ++YF FG + V V D T +GFGFI F +A R L + H ++G+ +
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 183 VR 188
V+
Sbjct: 182 VK 183
Score = 40.7 bits (91), Expect = 9e-04
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Frame = +2
Query: 152 PTHDRRALVRCSHPERQGRLVDGSSKGIRRPLYG----DITAEDLREYFGSFGQVTDVFV 319
P D++ L R + P V G ++ G IT E+ + YF FG + DV V
Sbjct: 82 PRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
Query: 320 ------PRPFRAFSFVTF-LDPEVARSLCGQDHIIKGVSVNISTASPK 442
RP R F F+TF D V R L H + G V + A PK
Sbjct: 142 MYDHNTQRP-RGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T E +R+YFS+FG++L V V R+ TG +GFGF+ F++ R L +H ID R D
Sbjct: 17 TDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVD 76
Query: 183 VRIPNGKDGSSTAHR 227
V+ ++ S A R
Sbjct: 77 VKRAMSREEQSPAGR 91
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 272 LREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDPEVARSLCGQDHIIKGVSVNISTAS 436
LREYF +FG+V V V R R F FV F DP V + H I V++ A
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAM 81
Query: 437 PKRERSTTAASG 472
+ E+S SG
Sbjct: 82 SREEQSPAGRSG 93
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQLRALGRRHMIDGRWCD 182
T + R YF ++G + + D T +GFGF+ F +E L H ++G+ +
Sbjct: 122 TSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVE 181
Query: 183 VRIPNGKDGS 212
V+ KD +
Sbjct: 182 VKRALPKDAN 191
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/75 (36%), Positives = 42/75 (56%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T EE +++YF +GDL+ + RD TG ++GFGFI FA+ R + +H+IDGR +
Sbjct: 26 TDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVE 85
Query: 183 VRIPNGKDGSSTAHR 227
+ +D R
Sbjct: 86 AKKAVPRDDQQVLKR 100
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
D E L+EYFG +G + + + R R F F+ F DP VA + HII G +V
Sbjct: 25 DTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTV 84
Query: 419 NISTASPKRER 451
A P+ ++
Sbjct: 85 EAKKAVPRDDQ 95
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TE ++YF FG + V V D T +GFGFI F E+ L + H ++G+ +
Sbjct: 134 TEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVE 193
Query: 183 VRIPNGKD-GSSTAHRKVFVG 242
V+ K+ S+T +R +G
Sbjct: 194 VKRAVPKELSSTTPNRSPLIG 214
Score = 38.7 bits (86), Expect = 0.003
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPE-VARSLCGQDHII 403
L IT + + YF FG + DV V RP R F F+TF E V L H +
Sbjct: 129 LPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRP-RGFGFITFDSEESVDMVLHKTFHEL 187
Query: 404 KGVSVNISTASPKRERSTTAASG--LGWGRMLG 496
G V + A PK STT +G+G G
Sbjct: 188 NGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYG 220
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 173
T+E+ +RDYF SFG++L + +D TG ++GFGF+ FA+ R + +H+IDG+
Sbjct: 17 TSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGK 73
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 260 TAED-LREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSVN 421
T+ED LR+YF SFG+V + + + R F FV F DP VA + HII G V
Sbjct: 17 TSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVE 76
Query: 422 ISTASPK 442
A P+
Sbjct: 77 AKKAVPR 83
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TE + YF+ FG + V V D RT +GFGFI + EA + L + H ++G+ +
Sbjct: 118 TEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 177
Query: 183 VRIPNGKD 206
V++ KD
Sbjct: 178 VKLAVPKD 185
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPE-VARSLCGQDHII 403
L +T + ++YF FG +TDV V RP R F F+++ E V + L H +
Sbjct: 113 LASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRP-RGFGFISYDSEEAVDKVLQKTFHEL 171
Query: 404 KGVSVNISTASPK 442
G V + A PK
Sbjct: 172 NGKMVEVKLAVPK 184
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 173
T+E+ +RDYF SFG++L + +D TG ++GFGF+ FA+ R + +H+IDG+
Sbjct: 17 TSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGK 73
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 260 TAED-LREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSVN 421
T+ED LR+YF SFG+V + + + R F FV F DP VA + HII G V
Sbjct: 17 TSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVE 76
Query: 422 ISTASPK 442
A P+
Sbjct: 77 AKKAVPR 83
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TE + YF+ FG + V V D RT +GFGFI + EA + L + H ++G+ +
Sbjct: 118 TEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 177
Query: 183 VRIPNGKD 206
V++ KD
Sbjct: 178 VKLAVPKD 185
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPE-VARSLCGQDHII 403
L +T + ++YF FG +TDV V RP R F F+++ E V + L H +
Sbjct: 113 LASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRP-RGFGFISYDSEEAVDKVLQKTFHEL 171
Query: 404 KGVSVNISTASPK 442
G V + A PK
Sbjct: 172 NGKMVEVKLAVPK 184
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 57.2 bits (132), Expect = 9e-09
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T EE +++YFSSFG+++ + +D TG ++GFGF+ FA+ + +H IDGR +
Sbjct: 17 TNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVE 76
Query: 183 VRIPNGKDGSSTAHR 227
+ +D + +R
Sbjct: 77 AKKAVPRDDQNMVNR 91
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
D E L+EYF SFG+V + + + R F FV F DP VA + + H I G V
Sbjct: 16 DTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLV 75
Query: 419 NISTASPKRERSTTAASGLGWGRMLGWPADHGHSR 523
A P+ +++ S + G P G +R
Sbjct: 76 EAKKAVPRDDQNMVNRSNS--SSIQGSPGGPGRTR 108
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPE-VARSLCGQDHII 403
L +T D + YF FG TDV V RP R F F+T+ E V + L H +
Sbjct: 115 LPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLLKTFHEL 173
Query: 404 KGVSVNISTASPKRERSTTAASGLGWGRMLG 496
G V + A PK + S LG G G
Sbjct: 174 NGKMVEVKRAVPKELSPGPSRSPLGAGYSYG 204
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TE + YF FG V V D T +GFGFI + EA + L + H ++G+ +
Sbjct: 120 TESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Query: 183 VR 188
V+
Sbjct: 180 VK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 57.2 bits (132), Expect = 9e-09
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T EE +++YFSSFG+++ + +D TG ++GFGF+ FA+ + +H IDGR +
Sbjct: 17 TNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVE 76
Query: 183 VRIPNGKDGSSTAHR 227
+ +D + +R
Sbjct: 77 AKKAVPRDDQNMVNR 91
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
D E L+EYF SFG+V + + + R F FV F DP VA + + H I G V
Sbjct: 16 DTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLV 75
Query: 419 NISTASPKRERSTTAASGLGWGRMLGWPADHGHSR 523
A P+ +++ S + G P G +R
Sbjct: 76 EAKKAVPRDDQNMVNRSNS--SSIQGSPGGPGRTR 108
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPE-VARSLCGQDHII 403
L +T D + YF FG TDV V RP R F F+T+ E V + L H +
Sbjct: 115 LPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRP-RGFGFITYDSEEAVEKVLLKTFHEL 173
Query: 404 KGVSVNISTASPKRERSTTAASGLGWGRMLG 496
G V + A PK + S LG G G
Sbjct: 174 NGKMVEVKRAVPKELSPGPSRSPLGAGYSYG 204
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TE + YF FG V V D T +GFGFI + EA + L + H ++G+ +
Sbjct: 120 TESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Query: 183 VR 188
V+
Sbjct: 180 VK 181
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 54.0 bits (124), Expect = 9e-08
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TT E +YF FG+++ + D TG +GFGF+ FA+ + L H+ID R D
Sbjct: 77 TTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVD 136
Query: 183 VR--IPNG-KDGSSTA---HRKVFVGRCTEILQ 263
++ +P G KD A RK+FVG +L+
Sbjct: 137 LKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLE 169
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQV------TDVFVPRPFRAFSFVTFLDPEVARSLCGQDHIIKGVS 415
+ TAE YFG FG+V TD P R F FVTF D VA + +DH+I
Sbjct: 76 ETTAETFANYFGKFGEVVDSVIMTDRITGNP-RGFGFVTFADSAVAEKVLEEDHVIDDRK 134
Query: 416 VNISTASPKRERST 457
V++ P+ ++ T
Sbjct: 135 VDLKRTLPRGDKDT 148
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA--QLRALGRRHMIDGRWCD 182
E+ +++YF +GD++ Q+ D TG S+GFGF+ F ++ +L + G+ H + + +
Sbjct: 170 EDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVE 229
Query: 183 VR 188
++
Sbjct: 230 IK 231
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +3
Query: 12 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRI 191
+ ++DY S FGDL V +D TG S+GFG++ FA E AL H + R +V++
Sbjct: 17 DGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKV 76
Query: 192 PNGKDGSSTAHRKV 233
K+ +KV
Sbjct: 77 ATPKEEMRQPAKKV 90
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
+ + +DLR+YFG FG + D ++P+ R F FVTF + VA + + H I G V
Sbjct: 250 EASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEV 309
Query: 419 NISTASPKRERSTTAAS 469
I +A+P E +A +
Sbjct: 310 AIDSATPLDEAGPSAGA 326
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 257 ITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDPEVARSLCGQDHIIKGVSVN 421
++ D R +F +G++TD+++P+ + R F+TF + L H + G +V
Sbjct: 102 VSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVA 161
Query: 422 ISTASPKRE 448
+ A+PK +
Sbjct: 162 VDRATPKED 170
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 18 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 173
+RDYF FG + + +D + +GFGF+ FAE R R H I G+
Sbjct: 256 LRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQ 307
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQDHIIKGVSV 418
DI ++ L++Y FG + D V + R F +VTF E A++ +H + +
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRIL 72
Query: 419 NISTASPKRE 448
+ A+PK E
Sbjct: 73 EVKVATPKEE 82
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T+EEA++ YFS +G +L V ++ TG +GFGF++FA ++AL H I G+ D
Sbjct: 17 TSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVD 76
Query: 183 VR 188
VR
Sbjct: 77 VR 78
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQLRALGRRHMIDGRWC 179
TTEE + YF FG V V D T +GFGF+ + +E ++ H + +
Sbjct: 131 TTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRV 190
Query: 180 DVRIPNGKDG 209
+V+ K+G
Sbjct: 191 EVKRAIPKEG 200
Score = 31.9 bits (69), Expect = 0.40
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPEVARSLCGQD--HI 400
L + T E+ + YF FG+ TDV V RP R F FVT+ D E + + Q H
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRP-RGFGFVTY-DSEDSVEVVMQSNFHE 184
Query: 401 IKGVSVNISTASPK 442
+ V + A PK
Sbjct: 185 LSDKRVEVKRAIPK 198
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T E+ +R++F+++G++ V RD TG +GFGF+ F++ R L +H ID R D
Sbjct: 17 TDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVD 76
Query: 183 VR 188
V+
Sbjct: 77 VK 78
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +2
Query: 260 TAED-LREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDPEVARSLCGQDHIIKGVSVN 421
T ED LRE+F ++G+V+ V R R F FV F DP V + + H I V+
Sbjct: 17 TDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVD 76
Query: 422 ISTASPKRERSTTAASG 472
+ A + E+ + +G
Sbjct: 77 VKRAMSREEQQVSGRTG 93
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
T+E R YF +G + V + D T +GFGF+ F +A L + H + G+ +
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVE 181
Query: 183 VRIPNGKDGS 212
V+ KD +
Sbjct: 182 VKRALPKDAN 191
Score = 37.9 bits (84), Expect = 0.006
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Frame = +2
Query: 257 ITAEDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPEVARSLCGQD-HIIKGVS 415
+T E+ R+YF +G VTDV + RP R F FV+F + S+ + H + G
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRP-RGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 179
Query: 416 VNISTASPKRERSTTAASGLGWGRMLGWPADHGH 517
V + A PK +G G G+ G+
Sbjct: 180 VEVKRALPKDANPGGGGRSMGGGGSGGYQGYGGN 213
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR 173
T + +R YF FG+++ V D TG SKG+GF+ F E EA +RA + +IDGR
Sbjct: 33 TQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGR 90
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFV-----PRPFRAFSFVTFLDPEVARSLC-GQDHIIKGVSVNIS 427
+ +R YF FG++ + V + + FVTF + E A C + +I G N +
Sbjct: 36 DTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCN 95
Query: 428 TA 433
A
Sbjct: 96 LA 97
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TT +F +G++ + RD TG +GFGFI FA+ + + H+I+G+ +
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVE 89
Query: 183 VR--IPNGKDGSSTAH---RKVFVG 242
++ IP G G+ + +K+FVG
Sbjct: 90 IKRTIPKGAGGNQSKDIKTKKIFVG 114
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 215 DGSSKG--IRRPLYGDITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDPEVA 373
DG+S G L+ D T ++FG +G++TD + R R F F+TF DP V
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 374 RSLCGQDHIIKGVSVNISTASPK 442
+ H+I G V I PK
Sbjct: 74 DKVIEDTHVINGKQVEIKRTIPK 96
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMID 167
TE+ ++D+F+ +G+++ QV RD T S+GFGF+ F E L + +MID
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMID 174
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TT +F +G++ + RD TG +GFGFI FA+ + + H+I+G+ +
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVE 89
Query: 183 VR--IPNGKDGSSTAH---RKVFVG 242
++ IP G G+ + +K+FVG
Sbjct: 90 IKRTIPKGAGGNQSKDIKTKKIFVG 114
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 215 DGSSKG--IRRPLYGDITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDPEVA 373
DG+S G L+ D T ++FG +G++TD + R R F F+TF DP V
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 374 RSLCGQDHIIKGVSVNISTASPK 442
+ H+I G V I PK
Sbjct: 74 DKVIEDTHVINGKQVEIKRTIPK 96
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMID 167
TE+ ++D+F+ +G+++ QV RD T S+GFGF+ F E L + +MID
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMID 174
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHMIDGR 173
TT + +R YF FG ++ V +T G SKG+GFI F +Y + +RAL + +IDGR
Sbjct: 23 TTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKPIIDGR 80
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFV-----PRPFRAFSFVTFLD-PEVARSLCGQDHIIKGVSVN 421
TA+DLR YF FGQV D V P + + F+TF D R+L II G + N
Sbjct: 24 TADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKPIIDGRTTN 83
Query: 422 ISTAS 436
+ AS
Sbjct: 84 CNLAS 88
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDGRWCD 182
++ + + FSSFG+++M +V +D TGLSKG+GF+K+A+ + A+ + +GR
Sbjct: 493 DDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLA 552
Query: 183 VRI 191
VRI
Sbjct: 553 VRI 555
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDGRWCD 182
++ + + FSSFG+++M +V +D TGLSKG+GF+K+A+ + A+ + +GR
Sbjct: 493 DDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLA 552
Query: 183 VRI 191
VRI
Sbjct: 553 VRI 555
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHMIDGRWC 179
T E + YF FG+++ +V D T SKGFGF+ F E E+ RA H IDGR
Sbjct: 20 TRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTV 79
Query: 180 DVRI 191
+ ++
Sbjct: 80 NCKL 83
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGRWC 179
T + +R YF FG++L + D TG SKG+GF+ F E ++ RA+ + +IDGR
Sbjct: 28 TPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKA 87
Query: 180 DVRI 191
+ I
Sbjct: 88 NCNI 91
Score = 31.1 bits (67), Expect = 0.70
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFV-----PRPFRAFSFVTFLDPEVA-RSLCGQDHIIKGVSVNIS 427
+++R YF FG++ + + + + FVTF + + A R++ + +I G N +
Sbjct: 31 DEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCN 90
Query: 428 TASPKRERST----TAASGLGWGRMLGWPADHGHSRHPIPSSQSP 550
AS R R + +G G P+ + P+P + +P
Sbjct: 91 IASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLPPAAAP 135
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGRWC 179
T + +R YF FG++L + D TG SKG+GF+ F E ++ RA+ + +IDGR
Sbjct: 28 TPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKA 87
Query: 180 DVRI 191
+ I
Sbjct: 88 NCNI 91
Score = 31.1 bits (67), Expect = 0.70
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFV-----PRPFRAFSFVTFLDPEVA-RSLCGQDHIIKGVSVNIS 427
+++R YF FG++ + + + + FVTF + + A R++ + +I G N +
Sbjct: 31 DEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCN 90
Query: 428 TASPKRERST----TAASGLGWGRMLGWPADHGHSRHPIPSSQSP 550
AS R R + +G G P+ + P+P + +P
Sbjct: 91 IASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLPPAAAP 135
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 173
T E +R +F +GD+L V D TG SKG+GF+ F + EA RA + +IDGR
Sbjct: 35 TQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +2
Query: 263 AEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLC-GQDHIIKGVSVNI 424
+E LR +F +G + + V + + FVTF DPE AR C II G N
Sbjct: 37 SETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANC 96
Query: 425 STASPKRER 451
+ AS R R
Sbjct: 97 NLASLGRSR 105
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+E+ +R F SFG + +VQV RD TGL KGFGF++FA E AL
Sbjct: 297 SEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL 342
Score = 33.9 bits (74), Expect = 0.099
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Frame = +2
Query: 143 IRPPTHDRRALVRCSHPERQGRLVDGSSKGIRRPLYGDI----TAEDLREYFGSFGQVTD 310
++P ++ + + G ++ S G RR G++ + +DLR+ F SFG V
Sbjct: 254 VKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVEL 313
Query: 311 VFVPRP----FRAFSFVTFLDPEVAR---SLCGQDHIIKGVSVNISTASPKRE 448
V VPR + F FV F E AR +L GQ I G ++ +S + + E
Sbjct: 314 VQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLE-IAGRAIKVSAVTDQTE 365
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGRWC 179
T + +R YF FG++L + D TG SKG+GF+ F + ++ RA+ + +IDGR
Sbjct: 28 TPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKA 87
Query: 180 DVRIPN-GKDGSST 218
+ I + G+ ST
Sbjct: 88 NCNIASFGRPRPST 101
Score = 34.3 bits (75), Expect = 0.075
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFV-----PRPFRAFSFVTFLDPEVA-RSLCGQDHIIKGVSVNIS 427
+++R YF FG++ + + + + FVTF D + A R++ + +I G N +
Sbjct: 31 DEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCN 90
Query: 428 TASPKRERSTTAASGLGWG 484
AS R R +T G G G
Sbjct: 91 IASFGRPRPST-PRGRGQG 108
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR-RHMIDGR 173
TT E +R FSS+GDL V D TG SKG+GF+ F + L AL IDGR
Sbjct: 86 TTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGR 143
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR-RHMIDGR 173
TT E +R FSS+GDL V D TG SKG+GF+ F + L AL IDGR
Sbjct: 86 TTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGR 143
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG-RRHMIDGR 173
T E +R +F +G++L V D TG SKG+GF+ F + EA RA +IDGR
Sbjct: 35 TQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +2
Query: 263 AEDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQ-DHIIKGVSVNI 424
+E LR++F +G++ + V + + FVTF DPE AR C II G N
Sbjct: 37 SETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANC 96
Query: 425 STASPKRER 451
+ AS R R
Sbjct: 97 NLASLGRPR 105
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TT +F +G++ + +D +TG +GFGF+ +A+ + + H+I G+ +
Sbjct: 53 TTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVE 112
Query: 183 VR--IPNGKDGSST-AHRKVFVG 242
++ IP G S+ +K+FVG
Sbjct: 113 IKRTIPRGSMSSNDFKTKKIFVG 135
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +2
Query: 185 SHPERQGRLVDGSSKGIRRPLYGDITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFV 349
S P G VD + K L + T+ + ++FG +G++TD + + R F FV
Sbjct: 30 SQPHSGGG-VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFV 88
Query: 350 TFLDPEVARSLCGQDHIIKGVSVNISTASPKRERST 457
T+ D V + +HII G V I P+ S+
Sbjct: 89 TYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSS 124
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA--QLRALGRRHMIDGRWCD 182
++ +++F FG+L Q+ RD TG S+GFGF+ + + L A G R + G +
Sbjct: 143 DDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVE 202
Query: 183 VRIPNGKDGSS 215
++ K +S
Sbjct: 203 IKKAEPKKPNS 213
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/55 (40%), Positives = 37/55 (67%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 173
E++++D FSSFG++ V++ D +G S+GFGF+ FAE + AL + +DG+
Sbjct: 54 EQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE---EGDALSAKDAMDGK 105
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 173
T + ++R+YF FGD++ V D +G SKG+GF+ F + EA +A + +IDGR
Sbjct: 18 THKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 272 LREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLC-GQDHIIKGVSVNISTA 433
LR YF FG + + V + + FVTF DPE A+ C +I G N + A
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRANCNLA 82
Query: 434 SPKRERS 454
+ +RS
Sbjct: 83 AFGVQRS 89
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 173
T + ++R+YF FGD++ V D +G SKG+GF+ F + EA +A + +IDGR
Sbjct: 18 THKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 272 LREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLC-GQDHIIKGVSVNISTA 433
LR YF FG + + V + + FVTF DPE A+ C +I G N + A
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRANCNLA 82
Query: 434 SPKRERS 454
+ +RS
Sbjct: 83 AFGVQRS 89
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 44.8 bits (101), Expect = 5e-05
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Frame = +2
Query: 203 GRLVDGSSKGIRRPLYGDITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDP- 364
GR D + + R L D EDLR+ F FG V D+++PR + R F FV F+DP
Sbjct: 29 GRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPA 88
Query: 365 EVARSLCGQD-HIIKGVSVNISTASPKRERST-TAASGLGWGRMLGW----PADHGHSRH 526
+ A + D +++ G + + A R++ T A G GR P + SR
Sbjct: 89 DAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRS 148
Query: 527 PIP 535
P P
Sbjct: 149 PPP 151
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDG 170
+E +R F FG + + + RD TG +GFGF++F + A +H +DG
Sbjct: 49 QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMD---PADAADAKHHMDG 99
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 242 PLYGDITAEDLREYFGSFGQVTDVFVP-RPFRAFSFVTFLDPEVARSLC--GQDHII 403
P T ED+ YFG+FG V DV +P + R F FVTFL E R + G H I
Sbjct: 325 PADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILARGNPHFI 381
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQ--LRALGRRHMIDGRWC 179
T+E V +YF +FG + V++ + + FGF+ F E + A G H I C
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQQK----RMFGFVTFLHSETVRIILARGNPHFI----C 382
Query: 180 DVRI 191
D R+
Sbjct: 383 DSRV 386
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 173
T +E ++ +F FG++L V D +G SKG+GF+ F E EA A + +IDGR
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 34.3 bits (75), Expect = 0.075
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLC-GQDHIIKGVSVNIS 427
E ++++F FG++ + V + + FVTF + E ARS C +I G N +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCN 86
Query: 428 TASPKRERSTTAASGLGWG 484
AS +RS + G G
Sbjct: 87 LASLGLQRSKPSTPNHGGG 105
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 173
T +E ++ +F FG++L V D +G SKG+GF+ F E EA A + +IDGR
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 34.3 bits (75), Expect = 0.075
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLC-GQDHIIKGVSVNIS 427
E ++++F FG++ + V + + FVTF + E ARS C +I G N +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCN 86
Query: 428 TASPKRERSTTAASGLGWG 484
AS +RS + G G
Sbjct: 87 LASLGLQRSKPSTPNHGGG 105
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA-LGRRHMIDGR 173
T +E ++ +F FG++L V D +G SKG+GF+ F E EA A + +IDGR
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 34.3 bits (75), Expect = 0.075
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLC-GQDHIIKGVSVNIS 427
E ++++F FG++ + V + + FVTF + E ARS C +I G N +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCN 86
Query: 428 TASPKRERSTTAASGLGWG 484
AS +RS + G G
Sbjct: 87 LASLGLQRSKPSTPNHGGG 105
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TT E +R F+ FG++ +V D +G SKGFGF+++A E + + +DG++ D
Sbjct: 67 TTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG---MDGKFLD 123
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
TTE+ +R+ S +G + +++ R TG S+G+GF+++ + LRA H +IDGR
Sbjct: 75 TTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 128
TT E ++D F+SFG L+ +V D +G SKGFGF+ +A E
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIE 86
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA---EYEAQLRALGRRHMIDGRW 176
TEE +R YF G++L V + +D RTG +G F+K+A + + +RAL + + G
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGT 191
Query: 177 --CDVRIPNG-KDGSSTAHRKVFVG 242
VR +G ++ T K+FVG
Sbjct: 192 GPVQVRYADGERERIGTLEFKLFVG 216
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TE+ V + F FG + V + RD S+G GF+K++ E + A+
Sbjct: 223 TEKEVEEIFLQFGHVEDVYLMRDEYRQ-SRGCGFVKYSSKETAMAAI 268
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA---EYEAQLRALGRRHMIDGRW 176
TEE +R YF G++L V + +D RTG +G F+K+A + + +RAL + + G
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGT 191
Query: 177 --CDVRIPNG-KDGSSTAHRKVFVG 242
VR +G ++ T K+FVG
Sbjct: 192 GPVQVRYADGERERIGTLEFKLFVG 216
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TE+ V + F FG + V + RD S+G GF+K++ E + A+
Sbjct: 223 TEKEVEEIFLQFGHVEDVYLMRDEYRQ-SRGCGFVKYSSKETAMAAI 268
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR-HMIDGRWCD 182
TE + YF+ FG + V V D RT +GFGFI + EA + L + H ++G+ +
Sbjct: 45 TEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 104
Query: 183 VRIPNGKD 206
V++ KD
Sbjct: 105 VKLAVPKD 112
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPE-VARSLCGQDHII 403
L +T + ++YF FG +TDV V RP R F F+++ E V + L H +
Sbjct: 40 LASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRP-RGFGFISYDSEEAVDKVLQKTFHEL 98
Query: 404 KGVSVNISTASPK 442
G V + A PK
Sbjct: 99 NGKMVEVKLAVPK 111
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMIDGRW 176
T + ++RD F+ FGD++ +V D TG S+GFGF+ F + A A+ ++GR
Sbjct: 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105
Query: 177 CDVRIPNGKDGSSTAH 224
V N + + A+
Sbjct: 106 IRVNPANDRPSAPRAY 121
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR--HMIDGRW 176
T + ++RD F+ FGD++ +V D TG S+GFGF+ F + A A+ ++GR
Sbjct: 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105
Query: 177 CDVRIPNGKDGSSTAH 224
V N + + A+
Sbjct: 106 IRVNPANDRPSAPRAY 121
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFVP-RPFRAFSFVTFLDPEVARSLC--GQDHII 403
ED+ +YF +FG V DV +P + R F FVTF+ PE +S+ G H +
Sbjct: 170 EDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFV 218
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF--AEYEAQLRALGRRHMI 164
EE V DYFS+FG + V++ + + FGF+ F E + A G H +
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQQK----RMFGFVTFMYPETVKSILAKGNPHFV 218
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.7 bits (96), Expect = 2e-04
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Frame = +2
Query: 218 GSSKG--IRRPLYGDITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDP---- 364
GSS G + R + D E+LRE F FG V DV++PR + R F+FV F+D
Sbjct: 43 GSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAG 102
Query: 365 EVARSLCGQDHIIKGVSVNISTASPKRERSTTAASGLGWGRMLG-WPADHGHSR-HPIPS 538
E RS+ + + ++V +++ S KR + G HG SR I
Sbjct: 103 EAQRSMNRRSFAGREITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISR 162
Query: 539 SQSP 550
S+SP
Sbjct: 163 SRSP 166
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
TT++++R FS FG + ++ RD+ T KGFGFI F + +AL +DG+ D
Sbjct: 18 TTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL---KSLDGKIVD 74
Query: 183 VRI 191
R+
Sbjct: 75 GRL 77
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
TTE+ +RD F FG+L+ + + D KGF F+++ E ++A+ H +DGR
Sbjct: 88 TTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGR 146
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 173
E+++R+ F+ +G+++ +V D TG S+GFGF+ F EA A+ +DGR
Sbjct: 53 EDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI---QALDGR 104
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Frame = +2
Query: 266 EDLREYFGSFGQVTD--VFVPRPF---RAFSFVTFLDPEVARS----LCGQDHIIKGVSV 418
+ LRE F +G+V D V + R R F FVTF E A S L G+D + G V
Sbjct: 54 DSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRD--LHGRVV 111
Query: 419 NISTASPKRERSTTAASGLGWG 484
++ A+ + G G G
Sbjct: 112 KVNYANDRTSGGGFGGGGYGGG 133
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 158
T+ + FS FGD+L Q+ + TG S+GFGFI FA+ A ++ H
Sbjct: 19 TDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMH 69
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +2
Query: 239 RPLYGDITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTFLDPEVARSLCGQ--DH 397
R L D EDLR F FG V D+++PR + R F F+ F+DP A Q +
Sbjct: 42 RNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGY 101
Query: 398 IIKGVSVNISTASPKRERST 457
++ G + + A R++ T
Sbjct: 102 LLLGRELTVVFAEENRKKPT 121
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDG 170
+E +R F FG + + + RD TG +GFGFI+F + A +H +DG
Sbjct: 50 QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMD---PADAAEAKHQMDG 100
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T+ + D F + +G + +V D TG SKG+GF++FA+ Q+RA+ ++G++C
Sbjct: 166 TDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE---MNGQYCS 222
Query: 183 VR 188
R
Sbjct: 223 TR 224
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCG--QDHIIKGVSV 418
L ++T ++L+ FG FG++ V +P P + FV + + A + G S+
Sbjct: 267 LDANVTDDELKSIFGQFGELLHVKIP-PGKRCGFVQYANKASAEHALSVLNGTQLGGQSI 325
Query: 419 NISTA-SPKRERSTTAASGLGWGRMLGWP--ADHGHSRHPIPSSQSPTS 556
+S SP ++ +G G+ G+P G+ P +Q P +
Sbjct: 326 RLSWGRSPNKQSDQAQWNGGGY---YGYPPQPQGGYGYAAQPPTQDPNA 371
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
T +EA+ D+F +GD+L + D T SKG+GF+ F + +A RA
Sbjct: 28 THKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFVP-RPFRAFSFVTFLDPEVARSLC--GQDHII 403
ED+ YF +FG V DV +P + R F FVTF+ PE +S+ G H +
Sbjct: 273 EDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFV 321
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA--EYEAQLRALGRRHMIDGRWCD 182
EE V +YFS+FG + V++ + + FGF+ F E + A G H + CD
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQQK----RMFGFVTFVYPETVKSILAKGNPHFV----CD 323
Query: 183 VRI 191
R+
Sbjct: 324 SRV 326
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMID 167
T++ +RD F +G L+ +V D +G S+GFGFI F E +A A+ + +D
Sbjct: 18 TSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMD 72
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 152
T E + + F FG + V V D +TG+S+GFGF+ F E RA+ +
Sbjct: 224 TREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 128
+E +R F +FG + +VQ+ D TG KGFGFI+F + E
Sbjct: 277 SELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 317
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
TE V ++FS G + V++ D + SKG G+I+F
Sbjct: 180 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 149
E + +FS FG + V+V R+ +TG SK FGFI+F + E A G
Sbjct: 73 ETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 119
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 269 DLREYFGSFGQVTDVFVPRPFRA-----FSFVTFLDPEVARSLCG--QDHIIKGVSVNIS 427
++ +F FG V V V R + F F+ F DPEVA G D+++ + +
Sbjct: 75 EIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVH 134
Query: 428 TASPK 442
P+
Sbjct: 135 VIEPE 139
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ + +DGR
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGR 75
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ + +DGR
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGR 75
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+ + +DGR
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGR 75
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR--RHMIDGRW 176
TT + + F+ +G ++ V + RD RTG S+GF F+++ + +A+ R ++DGR
Sbjct: 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGR- 85
Query: 177 CDVRIPNGKDGSSTAHRKVFVGRCTEILQPKISESTS 287
++ + K G + K+ GR E PK S S
Sbjct: 86 -EITVQFAKYGPNA--EKISKGRVVE-PPPKSRRSRS 118
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPR-----PFRAFSFVTF 355
TA+DL F +G+V DVF+PR R F+FV +
Sbjct: 28 TADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR--RHMIDGRW 176
TT + + F+ +G ++ V + RD RTG S+GF F+++ + +A+ R ++DGR
Sbjct: 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGR- 85
Query: 177 CDVRIPNGKDGSSTAHRKVFVGRCTEILQPKISESTS 287
++ + K G + K+ GR E PK S S
Sbjct: 86 -EITVQFAKYGPNA--EKISKGRVVE-PPPKSRRSRS 118
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPR-----PFRAFSFVTF 355
TA+DL F +G+V DVF+PR R F+FV +
Sbjct: 28 TADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHM-IDGRW 176
T + A+ F+ +GD++ ++ D TG S+GFGF+ F + +A A+ G +DGR
Sbjct: 19 TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRS 78
Query: 177 CDVRIPNGK-DGSSTAHR 227
V + G HR
Sbjct: 79 ITVNEAQSRGSGGGGGHR 96
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL-GRRHM-IDGRW 176
T + A+ F+ +GD++ ++ D TG S+GFGF+ F + +A A+ G +DGR
Sbjct: 19 TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRS 78
Query: 177 CDVRIPNGK-DGSSTAHR 227
V + G HR
Sbjct: 79 ITVNEAQSRGSGGGGGHR 96
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
T +E + ++F FG+++ V V D T S+G+GF+ F + E+ RA
Sbjct: 24 TRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T +E ++ FS FGD++ ++ D +G S+GFGF+ F + +A A+
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEY-EAQLRALGR-RHMIDGRW 176
TT++ +R+ FS +G+++ V RD T S+GFGF+ ++ + EA+ G ++GR
Sbjct: 14 TTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRR 73
Query: 177 CDVRI 191
V++
Sbjct: 74 VSVKL 78
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TTE+ + + FS G ++ Q+ D + SKGFGF+ FA + +AL
Sbjct: 45 TTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDV 185
T+ A+ D FS+F +V D +TG S+GFGF+ F + A+ ++G+W
Sbjct: 160 TDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE---MNGKWVSS 216
Query: 186 R 188
R
Sbjct: 217 R 217
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR--RHMIDGR- 173
T+E+ ++ FS+FG++ V++ +D SKG+ FI+F + A+ R M +GR
Sbjct: 51 TSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRM 110
Query: 174 -WCDVRIPNGKD 206
+ D+ P +D
Sbjct: 111 IYIDIAKPGKRD 122
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDGRWC 179
+EE ++ F G++ V++ ++ +T SKG F++FA E RA+ + MI+G+ C
Sbjct: 226 SEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKC 285
Query: 180 DVRIPNGKDGSSTAHRKVFVGRCTEILQPK 269
V D +FVG +I P+
Sbjct: 286 GVTASQDND-------TLFVGNICKIWTPE 308
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEA 131
EE VRD +G L V++ R+ + K FGF+ F +EA
Sbjct: 404 EERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA 444
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
T E+++ F+ FG++ ++ D TG SKGF F+ F + ++ A+ R + +DGR
Sbjct: 55 TDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGR 113
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 12 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 152
+A+ + FSSFG +L +V D TG SKG+GF++F + E+ A+ +
Sbjct: 150 KALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDK 195
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+E +++ FS +G++ +V + + G+S+GFGF+ ++ E LRAL
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRAL 389
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T+ + + F + + + +V D TG SKG+GF++FA+ Q+RA+ ++G++C
Sbjct: 185 TDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE---MNGQYCS 241
Query: 183 VR 188
R
Sbjct: 242 SR 243
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = +2
Query: 257 ITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCG--QDHIIKGVSVNIS- 427
+T +DL+ FG FG++ V +P R FV + + A + G S+ +S
Sbjct: 289 VTEDDLKSVFGQFGELVHVKIPAGKRC-GFVQYANRACAEQALSVLNGTQLGGQSIRLSW 347
Query: 428 --TASPKRERSTTAASGLGWGRMLGWPADHGHSRHPIPSSQSPTS 556
+ S K+ + A G G G G+P + P Q P +
Sbjct: 348 GRSPSNKQTQPDQAQYG-GGGGYYGYPPQGYEAYGYAPPPQDPNA 391
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T++ +R++F+ FG + +V RD +G+S+G GF+ F+ E RA+
Sbjct: 339 TDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI 384
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +3
Query: 12 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 152
+A+ + FS+FG +L +V D +G SKG+GF+++ EA A+ +
Sbjct: 147 KALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDK 192
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T+ + + F+ G ++ V+V RD T S G+G++ +A + RAL
Sbjct: 57 TDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
++E + F FG + RD G SKGFGF+ F + RA+
Sbjct: 236 SDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAV 281
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDGR 173
T E +++ F SFG ++ V D +GLS+GFGF+ + E A+ + +DGR
Sbjct: 47 TDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGR 105
Score = 30.7 bits (66), Expect = 0.93
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 167 RALVRCSHPERQGRLVDGSSKGIRRPLYGDITAEDLREYFGSFGQVTDVFVPRP-----F 331
RAL + S+ QG L SK L E L+E FGSFG++ D V
Sbjct: 18 RAL-QASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLS 76
Query: 332 RAFSFVTFLDPEVARS 379
R F FVT+ EVA +
Sbjct: 77 RGFGFVTYDSIEVANN 92
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 119
T + +++ F+SFG++ V D TG S+GFGF+ F+
Sbjct: 46 TDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 119
T + +++ F+SFG++ V D TG S+GFGF+ F+
Sbjct: 46 TDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 152
TT+E ++ F S+G++ V D TG KG+GF+ F + AL R
Sbjct: 419 TTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 513
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 242 PLYGDITAEDLREYFGSFGQVTDVFVP-RPFRAFSFVTFLDPEVARSLC--GQDHII 403
P T ED+ YF FG V DV +P + R + FVTF E R++ G H I
Sbjct: 273 PSESSFTDEDVSTYFRDFGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPHFI 329
>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 414
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 242 PLYGDITAEDLREYFGSFGQVTDVFVP-RPFRAFSFVTFLDPEVARSLC--GQDHII 403
P T ED+ YF FG V DV +P + R + FVTF E R++ G H I
Sbjct: 273 PSESSFTDEDVSTYFRDFGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPHFI 329
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 188
+ +R++FSS G++ V V D TG SKG +++F+E + + L M G + V
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNGSDMGGGFYLVVD 477
Query: 189 IPNGKDGSS 215
P + SS
Sbjct: 478 EPRPRGDSS 486
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 188
+E R ++SS +V D TG SKG+GF+KFAE + RA+ ++G +C R
Sbjct: 133 QETFRVHYSSVRG---AKVVTDPSTGRSKGYGFVKFAEESERNRAMAE---MNGLYCSTR 186
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
E + FS G+L+ V+V R+ TG +G+GFI+F + A R L
Sbjct: 37 ENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWC 179
T+E +R+ F+ FG + +V RD +G SKG GF+ F+ R L + M+ G+
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPL 398
Query: 180 DVRIPNGKD 206
V + K+
Sbjct: 399 YVALAQRKE 407
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T+ + DYF+ ++ V+V RD T S G+G++ ++ + +A+
Sbjct: 58 TDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAM 104
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T E+ + D FS FG+++ ++ D TG S+ FGF+ F E ++ A+
Sbjct: 18 TDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLM-VQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
E+ + D FS+FG + ++ RD TG S+GFGFI + +EA A+
Sbjct: 125 EKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +3
Query: 24 DYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
D FS+FG +L +V RD +G+SKG+GF++F
Sbjct: 49 DMFSAFGKVLSCKVARDA-SGVSKGYGFVQF 78
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 18 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+ + FS FG + +V + G+SKG GF++F+ E +A+
Sbjct: 239 LEELFSEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAM 280
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPR----PFRAFSFVTFLDPEVA 373
T DL+ FG FG++T V + R F FV F E A
Sbjct: 131 TDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAA 172
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T E +R+ FS +G+++ ++ D TG S+GF F+ F E A+
Sbjct: 45 TDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 12 EAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 152
+A+ + FSSFG +L +V D G SKG+GF++F + E A+ +
Sbjct: 146 KALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDK 191
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/46 (32%), Positives = 31/46 (67%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+E +++ FS +G++ +V +++ GLS+GFGF+ ++ E L A+
Sbjct: 341 DEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAM 385
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRP----FRAFSFVTFLDPEVA 373
+IT ++L++ FG +G ++ V + R+F FV F+ PE A
Sbjct: 235 EITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAA 278
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T + +R++FS FG ++ +V D +TG ++ F F+ F E + AL
Sbjct: 223 TQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 270
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 24 DYFSSFGDLLMVQVKRDTRTGLSKGFGFI 110
D F FG ++ V+V R+ +TG S+G G++
Sbjct: 126 DMFQPFGTVISVEVSRNPQTGESRGSGYV 154
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T E +++D FSSF + +V + TG S+G+GF+ F ++ A+
Sbjct: 42 TDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 18 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR-RHMIDG 170
+RD F FG L + + R+ TG +GFGF+K+ E A+ R H + G
Sbjct: 63 LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 114
Score = 34.3 bits (75), Expect = 0.075
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Frame = +2
Query: 191 PERQGRLVDGSSKGIRRPLYGDITAEDLREYFGSFGQVTDVFVPRPF-----RAFSFVTF 355
P + G S + R L D DLR+ F FG + D+++PR + R F FV +
Sbjct: 36 PSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY 95
Query: 356 LDPE-VARSLCGQDH-IIKGVSVNISTA-----SPKRERSTTAASG 472
E A ++ +H +I G + I A +P+ R+T SG
Sbjct: 96 RYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSG 141
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWC 179
TEE +R +FS G + ++ D + G SKGFGF+ F+ E + A+ H M G+
Sbjct: 316 TEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374
Query: 180 DVRIPNGKD 206
V I K+
Sbjct: 375 YVAIAQKKE 383
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T ++D F FG+++ +V G S+G+GF++F + +A A+
Sbjct: 124 TNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAI 169
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFVP----RPFRAFSFVTFLDPEVAR 376
L D++ + LRE F FG++ + + R R ++FV F +PE AR
Sbjct: 208 LDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDAR 255
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFVP-RPFRAFSFVTFLDPEVARSLC--GQDHII 403
ED+ YF FG V DV +P + R F FV+F PE + + G H I
Sbjct: 274 EDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFI 322
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 152
++E +++ FS FG + +V RD G SKG GF+ FA E A+ +
Sbjct: 144 SDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQ 191
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TT++ +++ F +G + V +D G SKGFGF+ F + RA+
Sbjct: 40 TTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAV 86
Score = 27.9 bits (59), Expect = 6.5
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPR----PFRAFSFVTFLD-PEVARSLCG-QDHIIKGVSVN 421
T +DL+ FG +G++T V + + F FV F + + AR++ H
Sbjct: 41 TDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWY 100
Query: 422 ISTASPKRERSTTAASGLGWGRMLGWPADHGHSRHPIPSSQSPTSNTSKLCLLFS 586
+ A K ER T + + + L AD S + + P+ + KL +FS
Sbjct: 101 VGRAQKKSERETELR--VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFS 153
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 173
F SFG +L +V D TG+SK FGF+ Y++Q A M++GR
Sbjct: 369 FQSFGIVLSAKVFVDKATGVSKCFGFV---SYDSQAAAQNAIDMMNGR 413
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR-RH---MIDG 170
+TEE + + +G L V+V R+ +G+S+GF FI F +A + R H ++DG
Sbjct: 309 STEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDG 368
Query: 171 R 173
R
Sbjct: 369 R 369
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
EE +R FS + +++ RD T +S+GF F+ F E +AL
Sbjct: 471 EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKAL 516
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TE + FS +G+++ V + RD TG SKGF F+ + + + + A+
Sbjct: 48 TEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T+E+ +R F FG+L+ V++ D + SKG+ F+++ EA AL
Sbjct: 293 TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTAL 340
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA--EYEAQLRALGRRHMIDGRWCD 182
E +R+ F +G ++ +V G SKGFGF+ F+ E Q + ++DG+
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Query: 183 VRIPNGKDGSSTAHRKVFVGRCTEILQPKISESTSAPLV 299
VR+ K+ ++ F + + Q + S + P++
Sbjct: 376 VRVAERKEDRIKRLQQYFQAQPRQYTQAPSAPSPAQPVL 414
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T++ + FS +G + V V RD G S+GFGF+ F E +A+
Sbjct: 214 TDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAM 259
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 158
T + F FG +L +V + G SKGFGF++F ++ + A H
Sbjct: 124 TSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALH 172
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = +2
Query: 257 ITAEDLREYFGSFGQVTDVFVPRP----FRAFSFVTFLDPEVAR----SLCG 388
+T + L F +G V+ V V R R F FV F +PE A+ SLCG
Sbjct: 213 VTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCG 264
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 24 DYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGR 152
+ F FG + V D +T +S+GFGF+ F E RA+ +
Sbjct: 192 ELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 158
EE +RD G++ V++ +D +G SKG+ F+ F + +A+ H
Sbjct: 129 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELH 178
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL--GRRHMIDGR 173
+TEE + FS +G +L V V D KGF ++ F+ E +AL ++DGR
Sbjct: 32 STEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGR 90
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.1 bits (77), Expect = 0.043
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEAQLRALGRRHMIDGRW 176
T E++ F GD++ +V D TG S+G+GF+ + AE E L +L ++GR
Sbjct: 189 TSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLD-GFELEGRA 247
Query: 177 CDVRIPNGK 203
V + GK
Sbjct: 248 IRVNLAQGK 256
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEAQLRALGRRHM 161
++ + F+ F M +V RD RTG +KG+GF+ F A+ A L+ + +++
Sbjct: 150 DDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYV 203
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TT E ++ F +G++ V D TG +KGFGF+ F + AL
Sbjct: 174 TTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
F+ G+++ +V R+ +TG +G+GFI+FA + A R L
Sbjct: 82 FAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 33 SSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+S+ + +V D TG +KG+GF++F++ Q+RA+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
F+ G+++ +V R+ +TG +G+GFI+FA + A R L
Sbjct: 82 FAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 33 SSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+S+ + +V D TG +KG+GF++F++ Q+RA+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 248 YGDITAEDLREYFGSFGQVTDVFVPRP 328
YGDI ED+R+ G FG +T+V +PRP
Sbjct: 491 YGDIM-EDMRQEGGKFGALTNVVIPRP 516
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 122
TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 34.3 bits (75), Expect = 0.075
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDV 185
T+ + FS F +V D +TG S+GFGF+ F + A+ ++G+W
Sbjct: 156 TDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE---MNGKWLSS 212
Query: 186 R 188
R
Sbjct: 213 R 213
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TT E + F +G++ V D TG +KGFGF+ F + AL
Sbjct: 115 TTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TT E + F +G++ V D TG +KGFGF+ F + AL
Sbjct: 115 TTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFA 119
TEEAVR FS +G +L V++ D R+ K +GF+ F+
Sbjct: 19 TEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFS 55
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+TE+ +R YF S G ++ V K G G FI F + RAL
Sbjct: 172 STEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRAL 219
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCD 182
T+ + + FS + + +V D+ TG SKG+GF++F + + RAL ++G +C
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE---MNGAYCS 270
Query: 183 VR 188
R
Sbjct: 271 NR 272
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVA 373
D+ EDLR+ F FG+V V +P + FV F D + A
Sbjct: 331 DVIDEDLRQPFSQFGEVVSVKIP-VGKGCGFVQFADRKSA 369
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 33.9 bits (74), Expect = 0.099
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFI---KFAEYEAQLRALGRRHMIDGRWCDVRI--- 191
F S G++ MV+V D TG S+GFGF+ +E EA + + +DGR V
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF-NGYELDGRPLRVNAGPP 169
Query: 192 -PNGKDGSSTAHRKVF 236
P +DG S R F
Sbjct: 170 PPKREDGFSRGPRSSF 185
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 15 AVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
A+ FS G ++ +V D +G SKGFGF+ +
Sbjct: 219 ALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 33.9 bits (74), Expect = 0.099
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDG 170
+ A+ YFSSFG++ V V TG S G+ +I E + LG RH + G
Sbjct: 251 KSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELG-RHDVGG 303
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 272 LREYFGSFGQVTDVFVP 322
L +YF SFG++T VFVP
Sbjct: 254 LSKYFSSFGEITRVFVP 270
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 33.9 bits (74), Expect = 0.099
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRA 143
TEE +R+ G ++ ++ D TG KG+GF ++ + E L A
Sbjct: 21 TEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSA 66
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQ 134
TEE +RD FS G++ V++KR + G S+ F +I F E EAQ
Sbjct: 15 TEERLRDVFSRKGEIADVKLKRKS-DGKSRQFAYIGFRTEQEAQ 57
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF-AEYEAQ--LRALGRRHMIDGR 173
TT++++R F+ F L+ +D +T KGFGFI F +E +AQ L+AL + +++GR
Sbjct: 82 TTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITFESEDDAQKALKALNGK-IVNGR 135
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR---- 173
+EE + FS FG ++ + +D R G S+GF FI+F ++ RA+ HM DGR
Sbjct: 29 SEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSAGRAM--LHM-DGRLIGQ 84
Query: 174 --WCDVRIPNGKDG 209
C R P +DG
Sbjct: 85 KILCVQRTPKVEDG 98
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
TEE + ++FS+FG + V + D T S+G +I + E RA+
Sbjct: 273 TEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARS 379
T ++L + FG FG + + +P P + + FL+P AR+
Sbjct: 467 TEKELAQMFGKFGSLDKIILP-PTKTMALAVFLEPAEARA 505
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 260 TAEDLREYFGSFGQVTDVFV-----PRPFRAFSFVTFLDPEVA 373
T E+L E+F +FG++++V + + R +++ +L PE A
Sbjct: 273 TEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECA 315
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLM----VQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGR 173
T+ A+ D FS+F +V D +TG S+GFGF+ F + A+ ++G+
Sbjct: 160 TDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE---MNGK 216
Query: 174 WCDVR 188
W R
Sbjct: 217 WVSSR 221
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL----GRRHMIDG 170
T EE + + F FG++ + + D R+G KG+ I++ + E A+ G +
Sbjct: 106 TQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165
Query: 171 RWCDVRIPNGKDGSSTAHRK 230
D +G G + RK
Sbjct: 166 VSVDWAFSSGPSGGESYRRK 185
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 122
TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 122
TE VR+ SFG L + +D TG SKG+ F + +
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWC 179
T + ++D F +L +V + TG S+GFGFI F E AL + ++GR
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
Query: 180 DVRIPNGKDGSSTAHRKVFVGRCTE 254
+ + + ++ + + V G E
Sbjct: 291 RLNLASEREKPTVSPPSVEEGETEE 315
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG--RRHMIDGRWC 179
T + F G ++ VQ+ D T S+GFGF+ E A+ I GR
Sbjct: 128 TSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTV 187
Query: 180 DVRIP 194
V P
Sbjct: 188 KVNFP 192
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 110
++ +R +FS G++ V V D TG S+GF +I
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
F FG +L +V D TG+SK FGFI + A A+
Sbjct: 359 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
F FG +L +V D TG+SK FGFI + A A+
Sbjct: 350 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 72 DTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 188
D+ TG SKG+GF++F + + RA+ ++G +C R
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTE---MNGAFCSSR 283
Score = 31.5 bits (68), Expect = 0.53
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCG--QDHIIKGVSV 418
L D+T EDL + F FG+V V +P + FV F + + A G +I +V
Sbjct: 334 LDADVTEEDLMQPFSDFGEVVSVKIP-VGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTV 392
Query: 419 NISTA-SPKRERSTTAASGLGWGRMLGWPADHGHS 520
+S SP ++ + + + G G ++G++
Sbjct: 393 RLSWGRSPNKQWRSDSGNQWNGGYSRGQGYNNGYA 427
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALG 149
TEE + FS FG+++ V++ + KG GF++FA ++ A+G
Sbjct: 339 TEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIG 380
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 188
E +++ F +FG+++ V++ D L +G G++ E++A+ A + +DG D +
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYV---EFKARADAEKAQLYMDGAQIDGK 167
Query: 189 I 191
+
Sbjct: 168 V 168
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +3
Query: 9 EEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 188
E +++ F +FG+++ V++ D L +G G++ E++A+ A + +DG D +
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYV---EFKARADAEKAQLYMDGAQIDGK 167
Query: 189 I 191
+
Sbjct: 168 V 168
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 257 ITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVAR 376
+T +L + F +FG V V+V R ++F+ F DP AR
Sbjct: 13 VTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDAR 52
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEA 131
F S G++ MV+V D TG S+GFGF+ AE EA
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 15 AVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
A+ + F+ G ++ +V D +G SKGFGF+ + + +A+ + +DGR
Sbjct: 264 ALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 318
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKF---AEYEA 131
F S G++ MV+V D TG S+GFGF+ AE EA
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 15 AVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGR 173
A+ + F+ G ++ +V D +G SKGFGF+ + + +A+ + +DGR
Sbjct: 272 ALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 326
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDV 185
T + FS+FG + V V +D T S+G F+ + E +A R D
Sbjct: 69 TNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA--------ARSMDA 120
Query: 186 RIPNGKDGSSTAHRKVFVGRCTEILQPKISESTS 287
+I NG+ T GR +E ++ ++ + S
Sbjct: 121 KILNGR--KLTVSIAADNGRASEFIKKRVYKDKS 152
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAE 122
TE +R+ SFG L + +D TG SKG+ F + +
Sbjct: 387 TEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQD 425
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 248 YGDITAEDLREYFGSFGQVTDVFVPRP 328
Y +I ED+R+ G FG + +V +PRP
Sbjct: 507 YAEIM-EDMRQEGGKFGNLVNVVIPRP 532
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 31.1 bits (67), Expect = 0.70
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH--MIDGRWC 179
+E ++ FS FG + V++ + RT S G+G++ F E A+ + DGR+
Sbjct: 89 SEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFI 148
Query: 180 DVRIPNGKDGSSTAHR 227
V+ G+ G S R
Sbjct: 149 LVKF--GQPGLSRRRR 162
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFA---EYEAQLRALGRRHMIDGRWCDVRI 191
FS G ++ +V D TG S+GFGF++ + E + AL ++ ++GR V +
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQN-LEGRAIKVNV 282
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +2
Query: 242 PLYGDITAEDLREYFGSFGQVTDVFVPRP------FRAFSFVTFLDPEVARSLCGQDHII 403
P D+ ED+ +F +G+V V +PR F + V F E A+++ Q+ +
Sbjct: 122 PFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNLVF 181
Query: 404 KGVSVNISTASPKRE 448
G + + PK+E
Sbjct: 182 AGQELEL---KPKKE 193
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 158
TE + F +G + Q+ TG +GFGFI F + A+ H
Sbjct: 24 TERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMH 74
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 158
TE + F +G + Q+ TG +GFGFI F + A+ H
Sbjct: 24 TERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMH 74
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 128
FS G ++ +V D TG S+GFGF+ ++ +
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 18 VRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
++ FS+ G + V + ++ TGL KGF F+KF
Sbjct: 347 IKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 45 DLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+++ V+V R+ GLS+G+GF++F ++ + L
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 6 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
++ + + FS + + +V D TG SKG+GF++F + + +A+
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 45 DLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+++ V+V R+ GLS+G+GF++F ++ + L
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 6 TEEAVRDYFSS-FGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
++ + + FS + + +V D TG SKG+GF++F + + +A+
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLD 361
L +T EDL++ F FG++ V +P + FV F++
Sbjct: 311 LDSSVTDEDLKQPFNEFGEIVSVKIP-VGKGCGFVQFVN 348
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVR 188
FS + +V D +TG S+GFGF+ F + A+ I G+W R
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE---ITGKWLGSR 208
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 27 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 197
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 198 GKDGSSTAH 224
K G H
Sbjct: 324 PKPGKQQQH 332
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 27 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 197
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 198 GKDGSSTAH 224
K G H
Sbjct: 324 PKPGKQQQH 332
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 27 YFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH-MIDGR--WCDVRIPN 197
+FS FG++ + D TG KGF + E+ RAL H +G C I
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 198 GKDGSSTAH 224
K G H
Sbjct: 324 PKPGKQQQH 332
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T E + + F +G++ + D +G SKG+GFI + AL
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 60 QVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
+V D TG SKG+GF++F + + +A+
Sbjct: 230 KVVLDANTGRSKGYGFVRFGDENERTKAM 258
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 245 LYGDITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLD 361
L +T EDL++ F FG++ V +P + FV F++
Sbjct: 313 LDSSVTDEDLKQPFSEFGEIVSVKIP-VGKGCGFVQFVN 350
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRR---HMIDGR 173
++E ++ F S+G + V + D T KG+ FI++ + ++A ++ IDGR
Sbjct: 149 SSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYM-HTRDMKAAYKQADGQKIDGR 207
Query: 174 WCDVRIPNGK 203
V + G+
Sbjct: 208 RVLVDVERGR 217
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 24 DYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRH 158
++FS FG++ + D TG KGF + E+ +AL H
Sbjct: 245 EFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPH 289
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 3 TTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRAL 146
T +++ D F +G++ + D +G SKG+GFI F AL
Sbjct: 139 TKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = +2
Query: 254 DITAEDLREYFGSFGQVTDVFVPR-----PFRAFSFVTFLDPEVA 373
D T DL+ + GS G+VT+V + R + ++FVTF ++A
Sbjct: 102 DATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLA 146
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYE 128
+E ++ FS FG + V++ + RT S G+G++ F E
Sbjct: 70 SEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At4g12450.1 68417.m01970 expressed protein
Length = 277
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +3
Query: 432 HHQSAKGPLLQPVGSVGAVCLAGQLIMATPGTPSPRVKALPQIRVNCASCSPQ 590
HH S KG LL P S ++ PGT K P +R C+S P+
Sbjct: 21 HHHSNKGKLLLP--SYSCRKNVRDVVNTQPGTVKKNPKPDPSLRRLCSSRRPE 71
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 30 FSSFGDLLMVQVKRDTRTGLSKGFGFIKF 116
F SFG +L +V D TG+SK FG + F
Sbjct: 368 FQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 110
TE + D+F+ G + V + D T S+GFGFI
Sbjct: 57 TERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 91
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 6 TEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFI 110
TE + D+F+ G + V + D T S+GFGFI
Sbjct: 87 TERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 121
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPE-VARSLCGQDHIIKGVSVNI 424
ED+R++FG G V + + +P R ++ F+D E +A ++ + G ++I
Sbjct: 665 EDIRKFFGDDGGVDSIRILHHKDTGKP-RGLAYADFVDDEHLAAAIAKNRKMFFGKKISI 723
Query: 425 STASPKRERSTTAASG 472
+ ++PK+ + G
Sbjct: 724 ARSNPKKGKKEFTRRG 739
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 266 EDLREYFGSFGQVTDVFV------PRPFRAFSFVTFLDPE-VARSLCGQDHIIKGVSVNI 424
ED+R++FG G V + + +P R ++ F+D E +A ++ + G ++I
Sbjct: 665 EDIRKFFGDDGGVDSIRILHHKDTGKP-RGLAYADFVDDEHLAAAIAKNRKMFFGKKISI 723
Query: 425 STASPKRERSTTAASG 472
+ ++PK+ + G
Sbjct: 724 ARSNPKKGKKEFTRRG 739
>At2g47070.1 68415.m05881 squamosa promoter-binding protein-like 1
(SPL1) identical to squamosa promoter binding
protein-like 1 [Arabidopsis thaliana] GI:5931655;
contains Pfam profile PF03110: SBP domain
Length = 881
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 338 FSFVTFLDPEVARSLCGQDHIIKGVSVNISTASPKRERSTTAASGL 475
FS++ + ++ + +DH++ + V+ S K +S AS L
Sbjct: 767 FSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQKEPKSGPMASAL 812
>At1g60830.1 68414.m06846 U2 snRNP auxiliary factor large subunit,
putative similar to GI:3850823 from (Nicotiana
plumbaginifolia) (J. Biol. Chem. 273 (51), 34603-34610
(1998))
Length = 111
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 248 YGDITAEDLREYFGSFGQVTDVFVPRP 328
Y DI ED+ + G FG + +V +PRP
Sbjct: 29 YADIM-EDMSQEGGKFGNLVNVVIPRP 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,148
Number of Sequences: 28952
Number of extensions: 346635
Number of successful extensions: 1390
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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