Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30468
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 85 7e-18
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 45 1e-05
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 29 0.64
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.0
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 2.0
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 27 3.4
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 26 4.5
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 7.9
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 7.9
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 7.9
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 85.4 bits (202), Expect = 7e-18
Identities = 42/90 (46%), Positives = 61/90 (67%)
Frame = +3
Query: 240 KVKGEAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNV 419
K K +AEKA+ PV AA K SK+EE++ P++Y++ RS + L+ K+ +PYPHKF V
Sbjct: 44 KAKKQAEKAASAPV-AAPKSSSKKEEDLDPSQYFENRSRTIMELRQ-TKDPNPYPHKFQV 101
Query: 420 SISLEEFIEKYQNLNNGDVLENVTLSVAGR 509
+I+L EFI KY+ L G+ V ++VAGR
Sbjct: 102 TITLPEFIAKYEGLARGETKPEVEVAVAGR 131
Score = 55.6 bits (128), Expect = 6e-09
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +2
Query: 509 VHSIRESGAKLIFYDLRAEGAKIQVMASAQLYETEDKFFKDTDKFRRGDIIGCVGHPGKT 688
V +R +G KL FY++ A+G K+QVM AQ +T D F + RRGDIIG G+PG++
Sbjct: 132 VLGLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVD-FAAQHEHLRRGDIIGIRGYPGRS 190
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +2
Query: 509 VHSIRESGAKLIFYDLRAEGAKIQVMASAQLYETED----KFFKDTDKFRRGDIIGCVGH 676
+ SIR SG+KL F+D+ K+QV+ + + TE+ KF ++GD I C G+
Sbjct: 90 ISSIRYSGSKLAFFDVLYGNKKLQVVFNKKNIGTEEEMKGKFIPRLKALQKGDCIQCSGN 149
Query: 677 PGKTKKGEL 703
G++ GEL
Sbjct: 150 VGRSGSGEL 158
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 196 AVSKGELKRRLKAEEKLREKPKKLHNSRS 282
A K E KRRL EE L+ KKLH ++
Sbjct: 649 AQQKREEKRRLAYEESLKRHAKKLHEKKT 677
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Frame = +3
Query: 276 PVVAAEKKPSKQEEE------ISPNEYYKLRSGAVAALKNGLKE 389
P A+ KPS+ EE + PN++ R+G VAAL++ L++
Sbjct: 453 PTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGFVAALESRLQK 496
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +3
Query: 285 AAEKKPS-KQEEEISP-NEYYKLRSGAVAALKNGLK---EDHPYPHKFNVSISLEEFIEK 449
A K+P+ K ++ S ++Y L SG + + + E PY + V+ S+ +
Sbjct: 448 AKNKQPATKLVQQASDFDQYVSLYSGYLQGFSDNFRPYVELLPYKNSRMVTHSIRFLEQS 507
Query: 450 YQNLNNGDVLENVTLSV 500
Y N++NG V N T V
Sbjct: 508 YTNVSNGLVFVNTTTDV 524
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2
Query: 65 WQKVPLKKFRKSEYSKA 115
W+K+P+ FRK++Y K+
Sbjct: 505 WEKIPIGTFRKNQYIKS 521
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 575 IQVMASAQLYETEDKFFKDTDKFRRG 652
I+V+ + LYETE ++KD F G
Sbjct: 279 IRVLDVSPLYETEPMYYKDQPSFLNG 304
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 548 YDLRAEGAKIQVMASAQLYETEDKFFKDTDKF 643
+D+ KI+V + +YE D FK+ F
Sbjct: 58 HDVLHTNPKIEVRSETHIYEPNDSLFKENQDF 89
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/80 (21%), Positives = 31/80 (38%)
Frame = +3
Query: 249 GEAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSIS 428
G ++ S V +K S + + I N + A + DH P ++ + S
Sbjct: 15 GSSKSTSVDAVPNMDKSSSVRRKNIDSNGLQQTNQIEQAESSLNAEADHSEPERYGCTPS 74
Query: 429 LEEFIEKYQNLNNGDVLENV 488
+ F+ + N +LE V
Sbjct: 75 GKVFLLPKEQENRRSILETV 94
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -1
Query: 76 NFLPWLSDLIHLT 38
+F+PWL+D+ HLT
Sbjct: 6 HFVPWLTDIRHLT 18
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 375 NGLKEDHPYPHKFNVSISLEEFIEKYQNLNN 467
NGL ++ P VS + E I+ Y+NLN+
Sbjct: 228 NGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,552
Number of Sequences: 5004
Number of extensions: 45391
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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