Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30468
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 70 2e-12
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 34 0.095
01_05_0227 - 19512866-19514983 32 0.38
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 29 2.7
11_06_0690 + 26303733-26306540 29 4.7
03_05_0462 - 24564170-24565447 29 4.7
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 28 8.3
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503... 28 8.3
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Frame = +3
Query: 222 KVES*RKVKGEAEKASQQPVVAAEKKPSKQ----EEEISPNEYYKLRSGAVAALK-NGLK 386
K E R++K E +K AA +P K+ +EE+ P +YY+ R A+ +LK G+
Sbjct: 40 KQEEERRLKEEEKKKKAAATAAASGEPPKESAADDEEMDPTQYYENRLKALDSLKATGV- 98
Query: 387 EDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGR 509
+PYPHKF +I++ ++IEKY+++N GD L +VT +AGR
Sbjct: 99 --NPYPHKFLANITVADYIEKYKSMNVGDKLVDVTECLAGR 137
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +2
Query: 521 RESGAKLIFYDLRAEGAKIQVMASAQLYETED-KFFKDTDKFRRGDIIGCVGHPGKTKKG 697
R +KL+FYDL G K+QV A A+ E ED +F K +RGDI+G G+PGK+K+G
Sbjct: 142 RAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLKRGDIVGVCGYPGKSKRG 201
Query: 698 EL 703
EL
Sbjct: 202 EL 203
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 396 PYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGR 509
PY +K++ + + +E + Y +L NG+V +V +S+AGR
Sbjct: 122 PYAYKWDRTHTTKELQDGYTHLENGEVCADVAVSIAGR 159
Score = 34.3 bits (75), Expect = 0.095
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 521 RESGAKLIFYDLRAEGAKIQVMASAQLYETEDKFFKDTDKFRRGDIIGCVGHPGKTKKGE 700
R + KL+F +R + IQ+ TE++F + GDIIG G KT+KGE
Sbjct: 163 RRAFGKLVFMTVRDDSGTIQLYCEKDSL-TEEQFEQLKTIIDIGDIIGANGSIKKTEKGE 221
Query: 701 L 703
L
Sbjct: 222 L 222
>01_05_0227 - 19512866-19514983
Length = 705
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 158 LAEAISKSFKLDMTLLLNTHFFEIFSVELSAMAIGLNSLNLNIDIKIQLEC 6
+AEA+ ++ DM L + ++F L + AIGL+ L I +I +C
Sbjct: 151 VAEAVDSTYTFDMPFLSEDNSQKVFEQNLGSAAIGLDPEFLQIGTEIMKKC 201
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 246 KGEAEKASQQPVVAAEKKP---SKQEEEISPNEYYKLRSGAVAALKNGL 383
KGE SQ+P V AE+KP EE+ P++ K+ ++ NG+
Sbjct: 81 KGEGSMDSQEPRVDAEQKPVLSDNPEEQTIPSKDEKVLEPTISHDSNGI 129
>11_06_0690 + 26303733-26306540
Length = 935
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 306 KQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLEN 485
+Q +++ P Y RS +AA KNG K H V + FIE + GDVL
Sbjct: 847 RQRQQVVP--YSPRRSNRLAA-KNGGKHIHSSTKAQRVVMKKLGFIEDENKADEGDVLRY 903
Query: 486 VTL 494
V L
Sbjct: 904 VEL 906
>03_05_0462 - 24564170-24565447
Length = 425
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 608 TEDKFFKDTDKFRRGDIIGCVGHPGKTKKGEL 703
TED+ K T+ F +IGC GH G +G L
Sbjct: 48 TEDELKKATNNFSDDQVIGCGGH-GTVYRGTL 78
>06_01_0916 +
7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 252 EAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRS 353
++ K S +P+ EK ++++E+ N++ KLRS
Sbjct: 521 KSRKGSLEPISEVEKHNFRKDKELPENKFDKLRS 554
>03_05_0167 -
21448714-21448846,21449748-21449870,21450024-21450302,
21450389-21450672,21450737-21450964,21452937-21453110,
21453198-21453732,21453779-21453840,21453908-21454231,
21454664-21455093,21457033-21457268,21457355-21457414,
21457495-21457628,21457884-21458010,21458239-21458337,
21458414-21458513,21458601-21458671,21459101-21459172,
21459656-21459787,21460512-21460670
Length = 1253
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 312 EEEISPNEYYKLRSGAVAALKNGLKEDH 395
EE+++P + R G+V K LK DH
Sbjct: 5 EEQVAPEQVISTRGGSVLGKKTILKSDH 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,692,296
Number of Sequences: 37544
Number of extensions: 270915
Number of successful extensions: 694
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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